Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCV29_RS09375 Genome accession   NZ_AP024861
Coordinates   2114731..2116155 (+) Length   474 a.a.
NCBI ID   WP_073603072.1    Uniprot ID   A0A1M5XUM4
Organism   Vibrio aerogenes strain LMG 19650     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2109731..2121155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS09350 btuC 2109922..2110920 (-) 999 WP_073603068.1 vitamin B12 ABC transporter permease BtuC -
  OCV29_RS09355 - 2111026..2112054 (-) 1029 WP_073603069.1 succinylglutamate desuccinylase -
  OCV29_RS09360 - 2112511..2113731 (+) 1221 WP_073603070.1 glycoside hydrolase family 30 beta sandwich domain-containing protein -
  OCV29_RS09365 - 2113952..2114401 (+) 450 WP_073603071.1 thermonuclease family protein -
  OCV29_RS09370 - 2114340..2114645 (-) 306 WP_084193270.1 Arm DNA-binding domain-containing protein -
  OCV29_RS09375 sbcB 2114731..2116155 (+) 1425 WP_073603072.1 exodeoxyribonuclease I Machinery gene
  OCV29_RS09380 - 2116218..2116586 (+) 369 WP_073603073.1 CidA/LrgA family protein -
  OCV29_RS09385 - 2116586..2117272 (+) 687 WP_073603074.1 LrgB family protein -
  OCV29_RS09390 cdd 2117522..2118415 (+) 894 WP_073603075.1 cytidine deaminase -
  OCV29_RS09395 purT 2118616..2119809 (+) 1194 WP_073603108.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCV29_RS09400 - 2119922..2120566 (-) 645 WP_084193271.1 thiopurine S-methyltransferase -
  OCV29_RS09405 ihfA 2120682..2120972 (-) 291 WP_073603077.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54294.55 Da        Isoelectric Point: 5.5492

>NTDB_id=88873 OCV29_RS09375 WP_073603072.1 2114731..2116155(+) (sbcB) [Vibrio aerogenes strain LMG 19650]
MNNNDQPTFFFFDYETWGTSPAKDRPCQFAGIRTDMDFNIIGEPLTLYCKLPPDYLPSPEAALITGITPQLANAKGVSEP
EFIHRIHQELAKPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYGWSWQNGNSRWDLLDVARACHALRPDGINWPENDDGIT
SFKLEHLSVANQIEHSNAHDAMADVYATIELAKRIKNSQPKLFDYFFSMRHKRQLTELIDIVNMTPLMHVSGMLGHQCQY
TSWVVPLAWHPVNKNAVITVDLAKNPQPLFDLSAEELKERLYTRHDDLAEGELPVPVKLIHLNKCPILAPAKTLTAENAH
QIGINREACLQNLSALKGSPAIREKLLQLFTEEKPYPSDDNVDTMLYQGFFNPADKAAMEIIRETPPEMLGELSLTFQDQ
RIAPLLFRYRARNYPGTLSYQESQQWLSHCQDYFTSHMDDYILRLENLVVEHEGNESKLKILKSIYHYVAGLTS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=88873 OCV29_RS09375 WP_073603072.1 2114731..2116155(+) (sbcB) [Vibrio aerogenes strain LMG 19650]
ATGAATAACAACGACCAACCTACATTCTTCTTTTTTGATTATGAAACCTGGGGAACCAGCCCAGCCAAAGACCGGCCCTG
CCAGTTTGCCGGTATCCGGACAGACATGGATTTCAATATCATTGGTGAACCACTGACTTTGTACTGTAAATTACCACCGG
ATTATCTTCCATCTCCTGAAGCCGCTTTAATTACCGGTATTACTCCTCAGCTTGCCAATGCCAAAGGTGTGAGTGAGCCA
GAATTTATCCACCGGATTCATCAGGAACTGGCAAAGCCAAATACAACCAGCCTCGGCTATAACAGTATCCGCTTTGATGA
TGAAGTCACCCGCTATACCTGTTACAGAAACTTTCTTGACCCTTACGGATGGAGCTGGCAGAACGGCAATTCAAGATGGG
ATCTGCTGGATGTAGCCAGAGCCTGTCATGCACTGCGCCCCGACGGTATTAACTGGCCGGAAAATGATGATGGTATCACC
AGTTTCAAGCTTGAACATTTATCCGTTGCAAACCAAATCGAACACAGTAATGCGCACGATGCAATGGCCGATGTATACGC
AACCATTGAACTGGCAAAGCGGATTAAAAACTCACAGCCAAAACTATTCGATTACTTCTTTTCTATGCGTCACAAGCGCC
AGCTGACTGAGTTAATTGATATCGTCAATATGACACCACTCATGCATGTCTCCGGCATGTTGGGACATCAATGCCAGTAT
ACAAGCTGGGTTGTCCCCCTCGCCTGGCACCCCGTGAATAAAAATGCTGTGATTACTGTCGATCTGGCAAAAAATCCACA
ACCTTTATTTGATCTCTCTGCTGAAGAATTAAAAGAACGGTTATACACCAGACATGATGATTTAGCTGAAGGAGAGCTAC
CGGTTCCGGTGAAGCTGATTCATCTGAATAAATGTCCGATTCTGGCTCCGGCAAAAACGCTGACCGCAGAAAATGCGCAT
CAGATAGGTATCAACCGGGAAGCATGTCTGCAAAACCTGTCTGCCTTAAAAGGTTCACCAGCTATCAGAGAAAAACTGCT
TCAGTTATTCACTGAAGAGAAGCCATACCCGTCTGATGATAACGTCGATACCATGCTGTATCAGGGATTTTTTAATCCGG
CAGATAAAGCTGCGATGGAAATTATCCGCGAGACGCCACCAGAAATGCTCGGGGAGCTTTCTCTTACCTTTCAGGATCAG
AGAATTGCACCTCTTCTGTTCCGTTACCGGGCCAGAAATTACCCGGGTACATTAAGTTATCAGGAAAGTCAGCAGTGGTT
AAGTCACTGCCAGGATTACTTTACCAGTCATATGGATGATTATATTCTCAGGCTGGAAAATCTCGTGGTTGAGCATGAAG
GAAATGAATCAAAACTTAAGATCCTGAAATCCATTTACCATTATGTTGCCGGACTGACTTCCTGA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5XUM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

71.459

99.789

0.713

Multiple sequence alignment