Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV29_RS03620 Genome accession   NZ_AP024861
Coordinates   770322..770840 (+) Length   172 a.a.
NCBI ID   WP_073603368.1    Uniprot ID   A0A1M5YDW1
Organism   Vibrio aerogenes strain LMG 19650     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 765322..775840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS03610 gshA 768124..769707 (+) 1584 WP_073603584.1 glutamate--cysteine ligase -
  OCV29_RS03615 - 769691..770299 (+) 609 WP_073603369.1 hypothetical protein -
  OCV29_RS03620 luxS 770322..770840 (+) 519 WP_073603368.1 S-ribosylhomocysteine lyase Regulator
  OCV29_RS03625 - 770886..772157 (-) 1272 WP_073603367.1 HlyC/CorC family transporter -
  OCV29_RS03630 - 772246..773040 (-) 795 WP_073603366.1 inner membrane protein YpjD -
  OCV29_RS03635 ffh 773243..774625 (+) 1383 WP_073603365.1 signal recognition particle protein -
  OCV29_RS03640 rpsP 774805..775053 (+) 249 WP_073603364.1 30S ribosomal protein S16 -
  OCV29_RS03645 rimM 775083..775631 (+) 549 WP_139281557.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18953.88 Da        Isoelectric Point: 4.8364

>NTDB_id=88868 OCV29_RS03620 WP_073603368.1 770322..770840(+) (luxS) [Vibrio aerogenes strain LMG 19650]
MPLLDSFTVDHTKMNAPAVRVAKTMKTPKGDTITVFDLRFTIPNQDILSEKGIHTLEHLYAGFMRAHLNGPDIEIIDISP
MGCRTGFYMSLIGTPAEEQIAEAWLSSMQDVLTVEDQSKIPELNIYQCGTAAMHSLDEAKEIARKIIDAGIAVNKNDALA
LPESLLKDLKIS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=88868 OCV29_RS03620 WP_073603368.1 770322..770840(+) (luxS) [Vibrio aerogenes strain LMG 19650]
ATGCCATTATTAGATAGTTTTACAGTTGATCATACAAAAATGAACGCGCCGGCTGTCCGTGTCGCAAAGACAATGAAGAC
TCCCAAAGGTGATACAATTACTGTGTTTGATCTTCGTTTTACGATTCCAAATCAGGATATTTTATCAGAAAAAGGGATTC
ATACACTGGAGCATCTTTATGCCGGTTTTATGCGGGCTCACCTGAATGGCCCGGATATTGAGATTATTGATATTTCTCCG
ATGGGATGCCGGACCGGATTTTATATGAGTCTGATTGGCACGCCAGCAGAAGAGCAAATTGCTGAAGCGTGGCTGAGCTC
GATGCAAGATGTACTGACTGTAGAGGATCAAAGTAAAATTCCTGAGCTGAATATTTATCAGTGTGGGACAGCAGCGATGC
ATTCTCTGGATGAAGCCAAAGAAATTGCCCGGAAAATTATTGATGCTGGCATCGCTGTGAACAAGAACGATGCACTTGCC
TTACCTGAATCTTTGTTAAAAGATTTGAAAATCAGCTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5YDW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

80.117

99.419

0.797

Multiple sequence alignment