Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RWA20_RS08030 Genome accession   NZ_CP136119
Coordinates   1676458..1677699 (-) Length   413 a.a.
NCBI ID   WP_005689610.1    Uniprot ID   A0A0E3CQJ6
Organism   Lacticaseibacillus rhamnosus strain LMG 23550     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1671458..1682699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA20_RS08025 (RWA20_08025) - 1674704..1676434 (-) 1731 WP_005689608.1 proline--tRNA ligase -
  RWA20_RS08030 (RWA20_08030) eeP 1676458..1677699 (-) 1242 WP_005689610.1 RIP metalloprotease RseP Regulator
  RWA20_RS08035 (RWA20_08035) - 1677716..1678504 (-) 789 WP_005689612.1 phosphatidate cytidylyltransferase -
  RWA20_RS08040 (RWA20_08040) - 1678540..1679292 (-) 753 WP_005689614.1 isoprenyl transferase -
  RWA20_RS08045 (RWA20_08045) frr 1679667..1680224 (-) 558 WP_005689615.1 ribosome recycling factor -
  RWA20_RS08050 (RWA20_08050) pyrH 1680224..1680943 (-) 720 WP_005689617.1 UMP kinase -
  RWA20_RS08055 (RWA20_08055) tsf 1681312..1682193 (-) 882 WP_005684325.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45280.89 Da        Isoelectric Point: 8.0452

>NTDB_id=888620 RWA20_RS08030 WP_005689610.1 1676458..1677699(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 23550]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGKVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQAGKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=888620 RWA20_RS08030 WP_005689610.1 1676458..1677699(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 23550]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCGATTGGCATGGGGCCTAAGCTATGGGCGTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAAGATGAGGAAGATGAAATCAAGCCCGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTAAAGTGACGCGGATTAATGCCAGTGATAAAACGACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGCTACCCTAATGGCGACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGTTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCCGGGCTTAAGTCCAATGCCACAATTCAGGCGATTGATGGTGAAAAAATCCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGGTAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAGCCTAACAAGGATGGCAAGATCGGCGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTAACTGGCGGCTTTTCGCTTAATAAGCTA
GCCGGGCCGGTCGGAATTTATACTATGACCAGTCAAAGTGCTAAAGGCGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTCGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCCTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTGCTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3CQJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.057

100

0.504
  eeP Streptococcus thermophilus LMD-9

48.821

100

0.501