Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ76_RS05705 Genome accession   NZ_AP027673
Coordinates   1156292..1157029 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSS-07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151292..1162029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ76_RS05675 (VEE16_10960) yfiL 1151450..1151815 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AABJ76_RS05680 (VEE16_10970) aroF 1152025..1153095 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABJ76_RS05685 (VEE16_10980) tyrA 1153106..1154227 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ76_RS05690 (VEE16_10990) pheA 1154270..1155430 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ76_RS05695 pheL 1155529..1155576 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABJ76_RS05700 (VEE16_11000) raiA 1155680..1156021 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ76_RS05705 (VEE16_11010) comL 1156292..1157029 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ76_RS05710 (VEE16_11020) rluD 1157164..1158144 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ76_RS05715 (VEE16_11030) yfiH 1158141..1158872 (+) 732 WP_023486560.1 purine nucleoside phosphorylase YfiH -
  AABJ76_RS05720 (VEE16_11040) clpC 1159002..1161575 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=88858 AABJ76_RS05705 WP_000197686.1 1156292..1157029(-) (comL) [Escherichia coli strain PSS-07]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=88858 AABJ76_RS05705 WP_000197686.1 1156292..1157029(-) (comL) [Escherichia coli strain PSS-07]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment