Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RWA17_RS07335 Genome accession   NZ_CP136116
Coordinates   1531664..1532905 (-) Length   413 a.a.
NCBI ID   WP_047676495.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain LMG 19717     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1526664..1537905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA17_RS07330 (RWA17_07330) - 1529910..1531640 (-) 1731 WP_005711690.1 proline--tRNA ligase -
  RWA17_RS07335 (RWA17_07335) eeP 1531664..1532905 (-) 1242 WP_047676495.1 RIP metalloprotease RseP Regulator
  RWA17_RS07340 (RWA17_07340) - 1532922..1533710 (-) 789 WP_005711688.1 phosphatidate cytidylyltransferase -
  RWA17_RS07345 (RWA17_07345) - 1533746..1534498 (-) 753 WP_005689614.1 isoprenyl transferase -
  RWA17_RS07350 (RWA17_07350) frr 1535119..1535676 (-) 558 WP_005684323.1 ribosome recycling factor -
  RWA17_RS07355 (RWA17_07355) pyrH 1535676..1536395 (-) 720 WP_005684324.1 UMP kinase -
  RWA17_RS07360 (RWA17_07360) tsf 1536764..1537645 (-) 882 WP_005684325.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45337.94 Da        Isoelectric Point: 8.0452

>NTDB_id=888559 RWA17_RS07335 WP_047676495.1 1531664..1532905(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 19717]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGKVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGNEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQADKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=888559 RWA17_RS07335 WP_047676495.1 1531664..1532905(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 19717]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCCATTGGCATGGGACCTAAGCTATGGGCGTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAGGATGAGGAAGATGAAATCAAGCCCGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTAAAGTGACGCGGATTAATGCCAGTGATAAAACGACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGTTACCCTAATGGCAACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGTTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCTGGGCTTAAGTCCAATGCCACAATTCAGGCGATTGATGGTGAAAAAATCCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGATAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAACCTAACAAAGATGGCAAGATCGGTGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTGACTGGCGGCTTTTCGCTTAATAAGTTA
GCCGGGCCGGTCGGGATTTATACCATGACCAGTCAAAGTGCTAAAGGCGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTTGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCCTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTGCTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.057

100

0.504
  eeP Streptococcus thermophilus LMD-9

48.821

100

0.501