Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RWA21_RS07365 Genome accession   NZ_CP136114
Coordinates   1533963..1535204 (-) Length   413 a.a.
NCBI ID   WP_047676495.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain LMG 23327     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528963..1540204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA21_RS07360 (RWA21_07360) - 1532209..1533939 (-) 1731 WP_005711690.1 proline--tRNA ligase -
  RWA21_RS07365 (RWA21_07365) eeP 1533963..1535204 (-) 1242 WP_047676495.1 RIP metalloprotease RseP Regulator
  RWA21_RS07370 (RWA21_07370) - 1535221..1536009 (-) 789 WP_005711688.1 phosphatidate cytidylyltransferase -
  RWA21_RS07375 (RWA21_07375) - 1536045..1536797 (-) 753 WP_005689614.1 isoprenyl transferase -
  RWA21_RS07380 (RWA21_07380) frr 1537418..1537975 (-) 558 WP_005684323.1 ribosome recycling factor -
  RWA21_RS07385 (RWA21_07385) pyrH 1537975..1538694 (-) 720 WP_005684324.1 UMP kinase -
  RWA21_RS07390 (RWA21_07390) tsf 1539063..1539944 (-) 882 WP_005684325.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45337.94 Da        Isoelectric Point: 8.0452

>NTDB_id=888496 RWA21_RS07365 WP_047676495.1 1533963..1535204(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 23327]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGKVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGNEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQADKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=888496 RWA21_RS07365 WP_047676495.1 1533963..1535204(-) (eeP) [Lacticaseibacillus rhamnosus strain LMG 23327]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCCATTGGCATGGGACCTAAGCTATGGGCGTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAGGATGAGGAAGATGAAATCAAGCCCGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTAAAGTGACGCGGATTAATGCCAGTGATAAAACGACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGTTACCCTAATGGCAACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGTTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCTGGGCTTAAGTCCAATGCCACAATTCAGGCGATTGATGGTGAAAAAATCCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGATAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAACCTAACAAAGATGGCAAGATCGGTGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTGACTGGCGGCTTTTCGCTTAATAAGTTA
GCCGGGCCGGTCGGGATTTATACCATGACCAGTCAAAGTGCTAAAGGCGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTTGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCCTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTGCTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.057

100

0.504
  eeP Streptococcus thermophilus LMD-9

48.821

100

0.501