Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RUI02_RS01960 Genome accession   NZ_CP136099
Coordinates   364146..364544 (-) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus sp. TSA-4     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 359146..369544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS01925 (RUI02_01925) - 360015..360210 (+) 196 Protein_335 hypothetical protein -
  RUI02_RS01930 (RUI02_01930) - 360217..360564 (+) 348 WP_082098065.1 RDD family protein -
  RUI02_RS01935 (RUI02_01935) - 360646..360978 (+) 333 WP_015252849.1 YckD family protein -
  RUI02_RS01940 (RUI02_01940) - 361106..361528 (+) 423 WP_174616579.1 MarR family winged helix-turn-helix transcriptional regulator -
  RUI02_RS01945 (RUI02_01945) - 361516..361857 (+) 342 WP_032724911.1 DUF3147 family protein -
  RUI02_RS01950 (RUI02_01950) - 361876..362604 (+) 729 WP_046380777.1 AAA family ATPase -
  RUI02_RS01955 (RUI02_01955) bglC 362676..364109 (+) 1434 WP_046380778.1 6-phospho-beta-glucosidase -
  RUI02_RS01960 (RUI02_01960) nin/comJ 364146..364544 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  RUI02_RS01965 (RUI02_01965) nucA/comI 364571..365020 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  RUI02_RS01970 (RUI02_01970) tlpC 365188..366909 (-) 1722 WP_046380779.1 methyl-accepting chemotaxis protein TlpC -
  RUI02_RS01975 (RUI02_01975) hxlB 367020..367577 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  RUI02_RS01980 (RUI02_01980) hxlA 367583..368215 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  RUI02_RS01985 (RUI02_01985) hxlR 368444..368806 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=888373 RUI02_RS01960 WP_015715226.1 364146..364544(-) (nin/comJ) [Bacillus sp. TSA-4]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=888373 RUI02_RS01960 WP_015715226.1 364146..364544(-) (nin/comJ) [Bacillus sp. TSA-4]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985