Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RP299_RS08240 Genome accession   NZ_CP136013
Coordinates   1637545..1638063 (-) Length   172 a.a.
NCBI ID   WP_004896330.1    Uniprot ID   A0A1Y4ICE7
Organism   Lactobacillus johnsonii strain N5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1632545..1643063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP299_RS08220 (RP299_08220) rplI 1633680..1634135 (-) 456 WP_315943452.1 50S ribosomal protein L9 -
  RP299_RS08225 (RP299_08225) - 1634147..1636165 (-) 2019 WP_192006028.1 DHH family phosphoesterase -
  RP299_RS08230 (RP299_08230) - 1636273..1637190 (-) 918 WP_011161252.1 magnesium transporter CorA family protein -
  RP299_RS08235 (RP299_08235) rpsR 1637284..1637520 (-) 237 WP_003649728.1 30S ribosomal protein S18 -
  RP299_RS08240 (RP299_08240) ssb 1637545..1638063 (-) 519 WP_004896330.1 single-stranded DNA-binding protein Machinery gene
  RP299_RS08245 (RP299_08245) rpsF 1638097..1638393 (-) 297 WP_004896331.1 30S ribosomal protein S6 -
  RP299_RS08250 (RP299_08250) gyrA 1638580..1641069 (-) 2490 WP_004898285.1 DNA gyrase subunit A -
  RP299_RS08255 (RP299_08255) gyrB 1641080..1643047 (-) 1968 WP_004898283.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18600.32 Da        Isoelectric Point: 4.7531

>NTDB_id=888242 RP299_RS08240 WP_004896330.1 1637545..1638063(-) (ssb) [Lactobacillus johnsonii strain N5]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=888242 RP299_RS08240 WP_004896330.1 1637545..1638063(-) (ssb) [Lactobacillus johnsonii strain N5]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y4ICE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.069

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.568

100

0.517