Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RS399_RS16115 Genome accession   NZ_CP135973
Coordinates   3225133..3225777 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220133..3230777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS16085 (RS399_16085) - 3220550..3220918 (-) 369 WP_084991317.1 hypothetical protein -
  RS399_RS16090 (RS399_16090) - 3221031..3221198 (-) 168 WP_142271075.1 hypothetical protein -
  RS399_RS16095 (RS399_16095) degQ 3221378..3221518 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RS399_RS16100 (RS399_16100) - 3221703..3222563 (+) 861 WP_084991345.1 polyprenyl synthetase family protein -
  RS399_RS16105 (RS399_16105) comX 3222576..3222740 (+) 165 WP_015384519.1 competence pheromone ComX -
  RS399_RS16110 (RS399_16110) comP 3222752..3225052 (+) 2301 WP_100276228.1 histidine kinase Regulator
  RS399_RS16115 (RS399_16115) comA 3225133..3225777 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RS399_RS16120 (RS399_16120) - 3225796..3226176 (+) 381 WP_019259331.1 hotdog fold thioesterase -
  RS399_RS16125 (RS399_16125) mnhG 3226215..3226589 (-) 375 WP_084991318.1 monovalent cation/H(+) antiporter subunit G -
  RS399_RS16130 (RS399_16130) - 3226573..3226857 (-) 285 WP_003241049.1 Na(+)/H(+) antiporter subunit F1 -
  RS399_RS16135 (RS399_16135) - 3226857..3227333 (-) 477 WP_003241050.1 Na+/H+ antiporter subunit E -
  RS399_RS16140 (RS399_16140) - 3227339..3228820 (-) 1482 WP_084991320.1 Na+/H+ antiporter subunit D -
  RS399_RS16145 (RS399_16145) - 3228813..3229154 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  RS399_RS16150 (RS399_16150) - 3229154..3229585 (-) 432 WP_003241054.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=888035 RS399_RS16115 WP_003220716.1 3225133..3225777(+) (comA) [Bacillus inaquosorum strain SI3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=888035 RS399_RS16115 WP_003220716.1 3225133..3225777(+) (comA) [Bacillus inaquosorum strain SI3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
CGAATCGAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTATTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCAAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1