Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   RS399_RS12995 Genome accession   NZ_CP135973
Coordinates   2602832..2603977 (-) Length   381 a.a.
NCBI ID   WP_003235896.1    Uniprot ID   A0A9W5LLN8
Organism   Bacillus inaquosorum strain SI3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2597832..2608977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS12960 (RS399_12960) - 2598390..2598950 (-) 561 WP_084992244.1 hypothetical protein -
  RS399_RS12965 (RS399_12965) - 2598943..2599590 (-) 648 WP_003235909.1 ABC transporter ATP-binding protein -
  RS399_RS12970 (RS399_12970) - 2599593..2600390 (-) 798 WP_250635418.1 hypothetical protein -
  RS399_RS12975 (RS399_12975) - 2600400..2601074 (-) 675 WP_019259771.1 hypothetical protein -
  RS399_RS12980 (RS399_12980) - 2601061..2601849 (-) 789 WP_084992248.1 hypothetical protein -
  RS399_RS12985 (RS399_12985) - 2601998..2602477 (-) 480 WP_003235899.1 hypothetical protein -
  RS399_RS12990 (RS399_12990) phrF 2602729..2602848 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  RS399_RS12995 (RS399_12995) rapF 2602832..2603977 (-) 1146 WP_003235896.1 response regulator aspartate phosphatase RapF Regulator
  RS399_RS13000 (RS399_13000) - 2604206..2605561 (+) 1356 WP_168767861.1 YncE family protein -
  RS399_RS13005 (RS399_13005) - 2605601..2606965 (+) 1365 WP_168767860.1 YncE family protein -
  RS399_RS13010 (RS399_13010) - 2606972..2607673 (-) 702 WP_084991201.1 antibiotic biosynthesis protein AlbG -
  RS399_RS13015 (RS399_13015) - 2607670..2608950 (-) 1281 WP_084991199.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45609.00 Da        Isoelectric Point: 5.1475

>NTDB_id=888023 RS399_RS12995 WP_003235896.1 2602832..2603977(-) (rapF) [Bacillus inaquosorum strain SI3]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AVTYFKRAIAVFEESNIIPSLPQAYFLITQIHYKMGKMDKAHAYHSKGMAYSQKAGDSIYLSEFEFLKSLYLSGPDEEAI
QSFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=888023 RS399_RS12995 WP_003235896.1 2602832..2603977(-) (rapF) [Bacillus inaquosorum strain SI3]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGAAGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCGCTAGAAAAAATGCGGATCGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTCG
TTAAGGATCGAATAGAGAAGGCAGAGTTTTTCTTTAAAATGTCTGAGTCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTTCAGTGTCACTCTTT
ATTTGCTACCAATTTCCTAGATCTGAAACAATATGAGGATGCCATATCACATTTTAAAAAAGCTTACTCTATGGCGGAAG
CTGAGAATCAGCCCCAATTAATGGGAAGAACATTGTACAACATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCGTAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCTAATATTATTCCTTCCCTGCCCCAAGCCTATTTTTT
AATTACACAAATTCATTATAAAATGGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATGGCTTATTCTCAAA
AGGCCGGAGATTCAATATATTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGTTTCTTTGATTTCCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTGAAAATTTTCAAAAAGCTTCTGCTTATTTCCTAAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

95.801

100

0.958
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572