Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RS399_RS12990 Genome accession   NZ_CP135973
Coordinates   2602729..2602848 (-) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus inaquosorum strain SI3     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2597729..2607848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS12960 (RS399_12960) - 2598390..2598950 (-) 561 WP_084992244.1 hypothetical protein -
  RS399_RS12965 (RS399_12965) - 2598943..2599590 (-) 648 WP_003235909.1 ABC transporter ATP-binding protein -
  RS399_RS12970 (RS399_12970) - 2599593..2600390 (-) 798 WP_250635418.1 hypothetical protein -
  RS399_RS12975 (RS399_12975) - 2600400..2601074 (-) 675 WP_019259771.1 hypothetical protein -
  RS399_RS12980 (RS399_12980) - 2601061..2601849 (-) 789 WP_084992248.1 hypothetical protein -
  RS399_RS12985 (RS399_12985) - 2601998..2602477 (-) 480 WP_003235899.1 hypothetical protein -
  RS399_RS12990 (RS399_12990) phrF 2602729..2602848 (-) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  RS399_RS12995 (RS399_12995) rapF 2602832..2603977 (-) 1146 WP_003235896.1 response regulator aspartate phosphatase RapF Regulator
  RS399_RS13000 (RS399_13000) - 2604206..2605561 (+) 1356 WP_168767861.1 YncE family protein -
  RS399_RS13005 (RS399_13005) - 2605601..2606965 (+) 1365 WP_168767860.1 YncE family protein -
  RS399_RS13010 (RS399_13010) - 2606972..2607673 (-) 702 WP_084991201.1 antibiotic biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=888022 RS399_RS12990 WP_003222023.1 2602729..2602848(-) (phrF) [Bacillus inaquosorum strain SI3]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=888022 RS399_RS12990 WP_003222023.1 2602729..2602848(-) (phrF) [Bacillus inaquosorum strain SI3]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487