Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RS399_RS10400 Genome accession   NZ_CP135973
Coordinates   2106751..2108127 (-) Length   458 a.a.
NCBI ID   WP_003242044.1    Uniprot ID   A0A9W5LEJ7
Organism   Bacillus inaquosorum strain SI3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2101751..2113127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS10380 (RS399_10380) ispF 2103267..2103743 (-) 477 WP_084994983.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RS399_RS10385 (RS399_10385) ispD 2103736..2104434 (-) 699 WP_084994986.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RS399_RS10390 (RS399_10390) - 2104449..2105549 (-) 1101 WP_003242040.1 PIN/TRAM domain-containing protein -
  RS399_RS10395 (RS399_10395) disA 2105665..2106747 (-) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  RS399_RS10400 (RS399_10400) radA 2106751..2108127 (-) 1377 WP_003242044.1 DNA repair protein RadA Machinery gene
  RS399_RS10405 (RS399_10405) clpC 2108218..2110650 (-) 2433 WP_019257273.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  RS399_RS10410 (RS399_10410) - 2110647..2111738 (-) 1092 WP_060397788.1 protein arginine kinase -
  RS399_RS10415 (RS399_10415) mcsA 2111738..2112295 (-) 558 WP_019257271.1 protein-arginine kinase activator protein McsA -
  RS399_RS10420 (RS399_10420) ctsR 2112309..2112773 (-) 465 WP_003242054.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49496.97 Da        Isoelectric Point: 7.9805

>NTDB_id=888014 RS399_RS10400 WP_003242044.1 2106751..2108127(-) (radA) [Bacillus inaquosorum strain SI3]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=888014 RS399_RS10400 WP_003242044.1 2106751..2108127(-) (radA) [Bacillus inaquosorum strain SI3]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGATG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACCCAGCTTGGCGAATTT
AACAGAGTGCTCGGCGGGGGCGTCGTTAAAGGTTCACTCGTTCTAATCGGCGGTGATCCCGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGATTCATCGAACAGTGTGCTGTACATTTCGGGAGAAGAATCGGTCAAACAAA
CGAAACTGAGAGCAGACCGTCTCGGCATAAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGTGATATCACATCAGC
TCCCGGCAGTGTGTCACAGGTCAGAGAATGTACGGCTGAGCTGATGAAAATTGCAAAAACAAAAGGCATACCGATTTTTA
TCGTAGGACATGTGACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACTTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTTGGATCTACAAACGAAATGGGCATTTT
CGAAATGCGCGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCTGAAATTTTCTTAGAAGAACGCTCGGCGGGATCCGCAG
GCTCGAGCATAACTGCTTCTATGGAAGGCACAAGACCGATTCTCGTTGAAATCCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGTATGGCAACGGGAATAGATCATAACAGGGTTTCGCTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCCGGCGGCGTTAAGCTTGACGAACCGGCAATTGATCTTGCTA
TTGCGATCAGTATCGCGTCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCAAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.345

100

0.993
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624