Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RS399_RS01200 Genome accession   NZ_CP135973
Coordinates   261435..262328 (-) Length   297 a.a.
NCBI ID   WP_084992481.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 256435..267328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS01185 (RS399_01185) xerC 256810..257724 (-) 915 WP_084992475.1 tyrosine recombinase XerC -
  RS399_RS01190 (RS399_01190) trmFO 257792..259099 (-) 1308 WP_084992477.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RS399_RS01195 (RS399_01195) topA 259175..261250 (-) 2076 WP_084992479.1 type I DNA topoisomerase -
  RS399_RS01200 (RS399_01200) dprA 261435..262328 (-) 894 WP_084992481.1 DNA-processing protein DprA Machinery gene
  RS399_RS01205 (RS399_01205) sucD 262389..263291 (-) 903 WP_084992483.1 succinate--CoA ligase subunit alpha -
  RS399_RS01210 (RS399_01210) sucC 263320..264477 (-) 1158 WP_019714397.1 ADP-forming succinate--CoA ligase subunit beta -
  RS399_RS01215 (RS399_01215) - 264651..264932 (-) 282 WP_084992485.1 FlhB-like flagellar biosynthesis protein -
  RS399_RS01220 (RS399_01220) - 264929..266659 (-) 1731 WP_315957531.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32953.36 Da        Isoelectric Point: 9.8035

>NTDB_id=887985 RS399_RS01200 WP_084992481.1 261435..262328(-) (dprA) [Bacillus inaquosorum strain SI3]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVFETVTRGKVKAAALKNKIEEYYPKLQRVLATYHEQGINIIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPATKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
DQAMEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=887985 RS399_RS01200 WP_084992481.1 261435..262328(-) (dprA) [Bacillus inaquosorum strain SI3]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACATCGCCCGTGTTCGAAACTGTTACTCGCGGTAAAGTAAAGGCAGCTGCATTAAAAA
ACAAAATAGAAGAATATTACCCAAAACTTCAGCGTGTACTTGCTACTTACCATGAGCAAGGCATTAACATCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCGTATGGTATACAAGTTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGACGGACAATAGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCATCCACCAGCAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
GATCAAGCAATGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTAATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

92.593

100

0.926
  dprA Lactococcus lactis subsp. cremoris KW2

41.573

89.899

0.374
  dprA Legionella pneumophila strain ERS1305867

37.162

99.663

0.37