Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU77_RS02215 Genome accession   NZ_AP024852
Coordinates   469096..469704 (-) Length   202 a.a.
NCBI ID   WP_048899261.1    Uniprot ID   A0A0J8XXQ7
Organism   Photobacterium swingsii strain CECT 7576     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 464096..474704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU77_RS02200 - 465148..466161 (+) 1014 WP_048899258.1 Fe(3+) ABC transporter substrate-binding protein -
  OCU77_RS02205 - 466312..467940 (+) 1629 WP_048899259.1 iron ABC transporter permease -
  OCU77_RS02210 - 467940..468977 (+) 1038 WP_048899260.1 ABC transporter ATP-binding protein -
  OCU77_RS02215 opaR 469096..469704 (-) 609 WP_048899261.1 TetR/AcrR family transcriptional regulator Regulator
  OCU77_RS02220 hpt 469932..470465 (+) 534 WP_048899262.1 hypoxanthine phosphoribosyltransferase -
  OCU77_RS02225 can 470539..471195 (-) 657 WP_048899263.1 carbonate dehydratase -
  OCU77_RS02230 - 471349..472278 (+) 930 WP_048899264.1 ABC transporter ATP-binding protein -
  OCU77_RS02235 - 472275..473045 (+) 771 WP_048899265.1 ABC transporter permease -
  OCU77_RS02240 panC 473144..474031 (-) 888 WP_107302986.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23215.32 Da        Isoelectric Point: 6.1444

>NTDB_id=88798 OCU77_RS02215 WP_048899261.1 469096..469704(-) (opaR) [Photobacterium swingsii strain CECT 7576]
MDTITKKTRTRLSPEKRKQQLLDYALDVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEEVLSQVENQFNQLLN
QCLGEPNKTLSARLTCISHNLIDAVIDQKDWIKVWFEWSTSVRDDIWPHFITGNKQSLKQITDMFADAIENGEITAERDP
KELGGLLHGICYVLYLHTNLHPDQAQMREQADQYLKNIYHQA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=88798 OCU77_RS02215 WP_048899261.1 469096..469704(-) (opaR) [Photobacterium swingsii strain CECT 7576]
ATGGATACAATTACTAAAAAAACGCGTACGCGTCTGTCGCCAGAAAAACGTAAACAACAGCTGCTCGATTATGCTCTAGA
TGTCTTCGCACGACGTGGTATTGGTCGTGCTGGTCATGCCGATATCGCAGAGATGGCTAACGTTTCTGTCGCGACCGTTT
TTAATTACTTTCCAACCCGTGAAGCGCTAGTTGAAGAAGTGCTCTCACAAGTCGAAAACCAGTTTAATCAACTTCTGAAC
CAATGCTTAGGCGAGCCAAATAAGACCTTATCTGCGCGTCTAACCTGCATTTCACATAATCTTATCGATGCCGTTATTGA
TCAAAAAGATTGGATTAAAGTCTGGTTCGAATGGAGTACCTCTGTTCGTGACGATATTTGGCCACACTTCATTACAGGTA
ATAAGCAGAGCTTGAAGCAAATCACTGATATGTTTGCAGACGCTATCGAAAATGGTGAAATCACCGCAGAACGCGATCCT
AAAGAATTGGGCGGCCTGTTGCATGGTATCTGCTATGTGCTTTATCTGCATACCAACCTGCACCCTGATCAAGCACAAAT
GCGCGAACAAGCAGATCAATACCTCAAAAATATTTACCACCAGGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8XXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

50.254

97.525

0.49
  hapR Vibrio cholerae C6706

45.596

95.545

0.436
  hapR Vibrio cholerae strain A1552

45.596

95.545

0.436

Multiple sequence alignment