Detailed information    

insolico Bioinformatically predicted

Overview


Name   braS   Type   Regulator
Locus tag   RS960_RS12980 Genome accession   NZ_CP135966
Coordinates   2618088..2618975 (-) Length   295 a.a.
NCBI ID   WP_221915213.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2613088..2623975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS12950 (RS960_12950) - 2613103..2613195 (+) 93 WP_010956583.1 hypothetical protein -
  RS960_RS12955 (RS960_12955) - 2613303..2613800 (-) 498 WP_317528765.1 glutathione peroxidase -
  RS960_RS12960 (RS960_12960) - 2613810..2614070 (-) 261 WP_014532715.1 hypothetical protein -
  RS960_RS12965 (RS960_12965) - 2614452..2614565 (-) 114 WP_072357681.1 hypothetical protein -
  RS960_RS12970 (RS960_12970) - 2615228..2617228 (-) 2001 WP_317528766.1 ABC transporter permease -
  RS960_RS12975 (RS960_12975) - 2617225..2617980 (-) 756 WP_317528767.1 ABC transporter ATP-binding protein -
  RS960_RS12980 (RS960_12980) braS 2618088..2618975 (-) 888 WP_221915213.1 nisin susceptibility-associated two-component system sensor histidine kinase NsaS Regulator
  RS960_RS12985 (RS960_12985) braR 2618986..2619651 (-) 666 WP_000697877.1 nisin susceptibility-associated two-component system response regulator NsaR Regulator
  RS960_RS12990 (RS960_12990) - 2619677..2619877 (-) 201 WP_000604725.1 hypothetical protein -
  RS960_RS12995 (RS960_12995) - 2620075..2621499 (+) 1425 WP_000948998.1 alkaline phosphatase -
  RS960_RS13505 - 2621559..2621660 (-) 102 WP_000731972.1 SE2200 family small protein -
  RS960_RS13005 (RS960_13005) - 2621782..2622237 (-) 456 WP_000106185.1 MarR family winged helix-turn-helix transcriptional regulator -
  RS960_RS13010 (RS960_13010) - 2622482..2623243 (-) 762 WP_000323448.1 alpha/beta hydrolase -

Sequence


Protein


Download         Length: 295 a.a.        Molecular weight: 34079.33 Da        Isoelectric Point: 5.8962

>NTDB_id=887902 RS960_RS12980 WP_221915213.1 2618088..2618975(-) (braS) [Staphylococcus aureus strain ST5477]
MTFLKSITQEIAIVIVIFALFGLMFYLYHLPLEAYLLAFGVILLLLLIFIGIKYLSFVKTISQQQQIENLENALYQLKNE
QIEYKNDVESYFLTWVHQMKTPITAAQLLLERDEPNVVNRVRQEVIQIDNYTSLALSYLKLLNETSDISVTKISINNIIR
PIIMKYSIQFIDQKTKIHYEPCHHEVLTDVRWTSLMIEQLINNALKYARGKDIWIEFDEQSNQLYVKDNGIGISEADLPK
IFDKGYSGYNGQRQSNSSGIGLFIVKQISTHTNHPVSVVSKQNEGTTFTIQFPDE

Nucleotide


Download         Length: 888 bp        

>NTDB_id=887902 RS960_RS12980 WP_221915213.1 2618088..2618975(-) (braS) [Staphylococcus aureus strain ST5477]
ATGACCTTTCTTAAAAGTATTACTCAGGAAATAGCAATAGTCATAGTTATTTTTGCTTTATTTGGCTTAATGTTTTACCT
GTATCATTTGCCATTAGAAGCATATTTACTAGCATTTGGCGTTATTTTATTATTATTACTCATATTTATAGGTATTAAAT
ATTTAAGTTTTGTAAAAACTATAAGCCAACAACAACAAATTGAAAACTTAGAAAATGCGTTGTATCAGCTTAAAAATGAA
CAAATTGAATATAAAAATGATGTAGAGAGCTACTTTTTAACATGGGTACATCAAATGAAAACACCCATTACTGCAGCACA
ACTGTTACTTGAAAGAGATGAGCCTAATGTTGTGAATCGTGTTCGTCAAGAGGTTATTCAAATTGATAACTATACAAGTT
TAGCACTTAGTTATTTAAAGTTATTAAATGAAACTTCTGATATTTCTGTCACTAAAATTTCGATTAACAATATCATTCGC
CCAATTATTATGAAATATTCAATACAGTTTATTGATCAAAAAACAAAAATCCATTATGAACCTTGTCATCACGAAGTATT
AACTGACGTTAGATGGACCTCTTTAATGATAGAACAATTAATAAATAATGCACTTAAGTATGCGAGAGGTAAAGATATAT
GGATTGAATTTGATGAGCAATCCAATCAATTATACGTAAAAGATAATGGTATCGGTATTAGTGAAGCGGACTTGCCTAAA
ATATTTGATAAGGGCTATTCAGGTTATAATGGCCAGCGGCAAAGTAACTCAAGTGGGATTGGTTTATTTATCGTAAAACA
AATTTCAACTCACACAAACCATCCTGTTTCAGTCGTATCTAAACAAAATGAGGGTACAACATTTACGATTCAATTTCCAG
ATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

98.983

100

0.99