Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RS960_RS10260 Genome accession   NZ_CP135966
Coordinates   2076570..2076965 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2071570..2081965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS10235 (RS960_10235) thiE 2072169..2072810 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  RS960_RS10240 (RS960_10240) thiM 2072812..2073603 (-) 792 WP_262538364.1 hydroxyethylthiazole kinase -
  RS960_RS10245 (RS960_10245) thiD 2073587..2074417 (-) 831 WP_317528667.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RS960_RS10250 (RS960_10250) tenA 2074410..2075099 (-) 690 WP_262607638.1 thiaminase II -
  RS960_RS10255 (RS960_10255) sceD 2075486..2076181 (-) 696 WP_262538358.1 lytic transglycosylase SceD -
  RS960_RS10260 (RS960_10260) ssb 2076570..2076965 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RS960_RS10265 (RS960_10265) - 2077159..2077599 (+) 441 WP_000846746.1 YwpF-like family protein -
  RS960_RS10270 (RS960_10270) fabZ 2077656..2078096 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RS960_RS10275 (RS960_10275) murA 2078130..2079395 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RS960_RS10280 (RS960_10280) - 2079495..2079728 (-) 234 WP_000384523.1 DUF1146 family protein -
  RS960_RS10285 (RS960_10285) - 2079860..2079953 (-) 94 Protein_1986 hypothetical protein -
  RS960_RS10290 (RS960_10290) - 2080547..2080951 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=887899 RS960_RS10260 WP_000932694.1 2076570..2076965(-) (ssb) [Staphylococcus aureus strain ST5477]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=887899 RS960_RS10260 WP_000932694.1 2076570..2076965(-) (ssb) [Staphylococcus aureus strain ST5477]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCCAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992