Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RS960_RS05735 Genome accession   NZ_CP135966
Coordinates   1186250..1187122 (+) Length   290 a.a.
NCBI ID   WP_317528988.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1181250..1192122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS05715 (RS960_05715) sucC 1181365..1182531 (+) 1167 WP_064126081.1 ADP-forming succinate--CoA ligase subunit beta -
  RS960_RS05720 (RS960_05720) sucD 1182553..1183461 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  RS960_RS05725 (RS960_05725) - 1183688..1184806 (+) 1119 WP_317528986.1 LysM peptidoglycan-binding domain-containing protein -
  RS960_RS05730 (RS960_05730) fmhC 1184834..1186078 (+) 1245 WP_317528987.1 FemA/FemB family glycyltransferase FmhC -
  RS960_RS05735 (RS960_05735) dprA 1186250..1187122 (+) 873 WP_317528988.1 DNA-processing protein DprA Machinery gene
  RS960_RS05740 (RS960_05740) topA 1187296..1189371 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  RS960_RS05745 (RS960_05745) trmFO 1189527..1190834 (+) 1308 WP_317528989.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33528.98 Da        Isoelectric Point: 9.4383

>NTDB_id=887876 RS960_RS05735 WP_317528988.1 1186250..1187122(+) (dprA) [Staphylococcus aureus strain ST5477]
MIRLFLLKLYWPHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQCGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDDYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=887876 RS960_RS05735 WP_317528988.1 1186250..1187122(+) (dprA) [Staphylococcus aureus strain ST5477]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGCCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAATGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACGACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

97.931

100

0.979
  dprA Staphylococcus aureus N315

97.586

100

0.976