Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RS960_RS04590 Genome accession   NZ_CP135966
Coordinates   955380..955949 (-) Length   189 a.a.
NCBI ID   WP_317528946.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 950380..960949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS04570 (RS960_04570) - 951883..953241 (+) 1359 WP_000021871.1 TrkH family potassium uptake protein -
  RS960_RS04575 (RS960_04575) - 953380..954891 (+) 1512 WP_000414178.1 bifunctional metallophosphatase/5'-nucleotidase -
  RS960_RS04590 (RS960_04590) comK/comK1 955380..955949 (-) 570 WP_317528946.1 competence protein ComK Regulator
  RS960_RS04595 (RS960_04595) - 956159..956377 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  RS960_RS04600 (RS960_04600) - 956458..957444 (-) 987 WP_317528947.1 lipoate--protein ligase -
  RS960_RS04605 (RS960_04605) - 957643..957819 (+) 177 WP_000214898.1 YkvS family protein -
  RS960_RS04610 (RS960_04610) - 957834..958436 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RS960_RS04615 (RS960_04615) - 958754..958816 (+) 63 WP_228764722.1 hypothetical protein -
  RS960_RS04620 (RS960_04620) - 959355..959453 (+) 99 Protein_898 hypothetical protein -
  RS960_RS04625 (RS960_04625) - 959445..959732 (+) 288 WP_000478236.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22583.86 Da        Isoelectric Point: 9.6091

>NTDB_id=887875 RS960_RS04590 WP_317528946.1 955380..955949(-) (comK/comK1) [Staphylococcus aureus strain ST5477]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPIYFFPAHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=887875 RS960_RS04590 WP_317528946.1 955380..955949(-) (comK/comK1) [Staphylococcus aureus strain ST5477]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAATTTATTTTTTCCCAGCACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.942

100

0.989
  comK/comK1 Staphylococcus aureus N315

98.942

100

0.989