Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RS960_RS04445 Genome accession   NZ_CP135966
Coordinates   922597..923583 (+) Length   328 a.a.
NCBI ID   WP_262537067.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 917597..928583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS04425 (RS960_04425) - 917955..919577 (+) 1623 WP_317528941.1 peptide ABC transporter substrate-binding protein -
  RS960_RS04430 (RS960_04430) trpS 919697..920686 (-) 990 WP_103204600.1 tryptophan--tRNA ligase -
  RS960_RS04435 (RS960_04435) spxA 920981..921376 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  RS960_RS04440 (RS960_04440) mecA 921757..922476 (+) 720 WP_001217728.1 adaptor protein MecA -
  RS960_RS04445 (RS960_04445) coiA 922597..923583 (+) 987 WP_262537067.1 competence protein CoiA Machinery gene
  RS960_RS04450 (RS960_04450) pepF 923631..925439 (+) 1809 WP_262537064.1 oligoendopeptidase F -
  RS960_RS04455 (RS960_04455) yjbH 925899..926705 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  RS960_RS04460 (RS960_04460) - 926728..927093 (-) 366 WP_262607972.1 truncated hemoglobin YjbI -
  RS960_RS04465 (RS960_04465) - 927197..927790 (-) 594 WP_064279420.1 CYTH domain-containing protein -
  RS960_RS04470 (RS960_04470) - 927976..928323 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38653.23 Da        Isoelectric Point: 9.6530

>NTDB_id=887874 RS960_RS04445 WP_262537067.1 922597..923583(+) (coiA) [Staphylococcus aureus strain ST5477]
MLVALNGEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEVPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=887874 RS960_RS04445 WP_262537067.1 922597..923583(+) (coiA) [Staphylococcus aureus strain ST5477]
ATGTTAGTAGCTTTAAATGGAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGTGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.341

100

0.963
  coiA Staphylococcus aureus MW2

96.341

100

0.963