Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RS960_RS02565 Genome accession   NZ_CP135966
Coordinates   541128..541697 (+) Length   189 a.a.
NCBI ID   WP_262537357.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 536128..546697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS02540 (RS960_02540) cysE 537341..537988 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RS960_RS02545 (RS960_02545) cysS 537972..539372 (+) 1401 WP_317528877.1 cysteine--tRNA ligase -
  RS960_RS02550 (RS960_02550) - 539365..539769 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RS960_RS02555 (RS960_02555) rlmB 539777..540523 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RS960_RS02560 (RS960_02560) - 540523..541047 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RS960_RS02565 (RS960_02565) sigH 541128..541697 (+) 570 WP_262537357.1 sigma-70 family RNA polymerase sigma factor Regulator
  RS960_RS02570 (RS960_02570) rpmG 541812..541955 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RS960_RS02575 (RS960_02575) secE 542011..542193 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RS960_RS02580 (RS960_02580) nusG 542206..542754 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RS960_RS02585 (RS960_02585) rplK 542934..543356 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RS960_RS02590 (RS960_02590) rplA 543564..544256 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RS960_RS02595 (RS960_02595) rplJ 544528..545028 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RS960_RS02600 (RS960_02600) rplL 545072..545440 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RS960_RS02605 (RS960_02605) - 545615..546223 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=887867 RS960_RS02565 WP_262537357.1 541128..541697(+) (sigH) [Staphylococcus aureus strain ST5477]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=887867 RS960_RS02565 WP_262537357.1 541128..541697(+) (sigH) [Staphylococcus aureus strain ST5477]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979