Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RUL31_RS12900 Genome accession   NZ_CP135964
Coordinates   2663114..2664844 (-) Length   576 a.a.
NCBI ID   WP_106360550.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2658114..2669844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS12880 (RUL31_12880) - 2658250..2659368 (+) 1119 WP_106360551.1 NADH-dependent flavin oxidoreductase -
  RUL31_RS12885 (RUL31_12885) - 2659533..2660390 (+) 858 WP_003325485.1 manganese catalase family protein -
  RUL31_RS12890 (RUL31_12890) spo0A 2660559..2661356 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  RUL31_RS12895 (RUL31_12895) spoIVB 2661639..2662919 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  RUL31_RS12900 (RUL31_12900) recN 2663114..2664844 (-) 1731 WP_106360550.1 DNA repair protein RecN Machinery gene
  RUL31_RS12905 (RUL31_12905) argR 2664879..2665328 (-) 450 WP_003325480.1 arginine repressor ArgR -
  RUL31_RS12910 (RUL31_12910) - 2665427..2666272 (-) 846 WP_106360549.1 TlyA family RNA methyltransferase -
  RUL31_RS12915 (RUL31_12915) dxs 2666269..2668170 (-) 1902 WP_106360548.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RUL31_RS12920 (RUL31_12920) - 2668378..2669268 (-) 891 WP_106360547.1 polyprenyl synthetase family protein -
  RUL31_RS12925 (RUL31_12925) - 2669258..2669512 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64473.23 Da        Isoelectric Point: 4.7466

>NTDB_id=887822 RUL31_RS12900 WP_106360550.1 2663114..2664844(-) (recN) [Bacillus atrophaeus strain CD303]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSSGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDIVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKREKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=887822 RUL31_RS12900 WP_106360550.1 2663114..2664844(-) (recN) [Bacillus atrophaeus strain CD303]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCAGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAGCGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGCTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCCGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATACGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATAGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTTGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCGAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCGGGAAAAGGTGGCAGAAATCGGCCGGATGATTGCCGGGGTCGAGGTGACCGATCTGACCAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.104

100

0.901