Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RUL31_RS12890 Genome accession   NZ_CP135964
Coordinates   2660559..2661356 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2655559..2666356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS12865 (RUL31_12865) - 2655991..2656734 (-) 744 WP_003325489.1 glycerophosphodiester phosphodiesterase -
  RUL31_RS12870 (RUL31_12870) - 2656846..2657469 (-) 624 WP_106360552.1 N-acetylmuramoyl-L-alanine amidase -
  RUL31_RS12875 (RUL31_12875) - 2657492..2657794 (-) 303 WP_003325487.1 hypothetical protein -
  RUL31_RS12880 (RUL31_12880) - 2658250..2659368 (+) 1119 WP_106360551.1 NADH-dependent flavin oxidoreductase -
  RUL31_RS12885 (RUL31_12885) - 2659533..2660390 (+) 858 WP_003325485.1 manganese catalase family protein -
  RUL31_RS12890 (RUL31_12890) spo0A 2660559..2661356 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  RUL31_RS12895 (RUL31_12895) spoIVB 2661639..2662919 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  RUL31_RS12900 (RUL31_12900) recN 2663114..2664844 (-) 1731 WP_106360550.1 DNA repair protein RecN Machinery gene
  RUL31_RS12905 (RUL31_12905) argR 2664879..2665328 (-) 450 WP_003325480.1 arginine repressor ArgR -
  RUL31_RS12910 (RUL31_12910) - 2665427..2666272 (-) 846 WP_106360549.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=887821 RUL31_RS12890 WP_010789174.1 2660559..2661356(-) (spo0A) [Bacillus atrophaeus strain CD303]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=887821 RUL31_RS12890 WP_010789174.1 2660559..2661356(-) (spo0A) [Bacillus atrophaeus strain CD303]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGCCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTGGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGGGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974