Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RUL31_RS00580 Genome accession   NZ_CP135964
Coordinates   106004..107383 (+) Length   459 a.a.
NCBI ID   WP_106048265.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101004..112383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS00560 (RUL31_00560) ctsR 101358..101822 (+) 465 WP_003328320.1 transcriptional regulator CtsR -
  RUL31_RS00565 (RUL31_00565) - 101836..102393 (+) 558 WP_106361264.1 UvrB/UvrC motif-containing protein -
  RUL31_RS00570 (RUL31_00570) - 102393..103484 (+) 1092 WP_010787416.1 protein arginine kinase -
  RUL31_RS00575 (RUL31_00575) clpC 103481..105919 (+) 2439 WP_003328317.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  RUL31_RS00580 (RUL31_00580) radA 106004..107383 (+) 1380 WP_106048265.1 DNA repair protein RadA Machinery gene
  RUL31_RS00585 (RUL31_00585) disA 107387..108469 (+) 1083 WP_010787418.1 DNA integrity scanning diadenylate cyclase DisA -
  RUL31_RS00590 (RUL31_00590) - 108590..109690 (+) 1101 WP_003328314.1 PIN/TRAM domain-containing protein -
  RUL31_RS00595 (RUL31_00595) ispD 109704..110402 (+) 699 WP_088116361.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RUL31_RS00600 (RUL31_00600) ispF 110395..110871 (+) 477 WP_003328312.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49577.99 Da        Isoelectric Point: 8.2443

>NTDB_id=887786 RUL31_RS00580 WP_106048265.1 106004..107383(+) (radA) [Bacillus atrophaeus strain CD303]
MAKSKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPITSIETSEEPRIKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSTHSVLYISGEESVKQTKLRADRLGINNQTLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVSVSIASSFRDTPPNPADCIIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=887786 RUL31_RS00580 WP_106048265.1 106004..107383(+) (radA) [Bacillus atrophaeus strain CD303]
ATGGCTAAATCAAAAACGAAATTTATCTGCCAATCCTGCGGCTATGAATCCGCAAAGTGGATGGGGAAATGTCCAGGCTG
CGGAGCTTGGAACACAATGACAGAAGAAACAGTAAAAAAAACACCGGCTAATCGCAGAGCAGCTTTTGCACACTCTACCC
AAACCGTAAAGAAACCTTCACCTATCACATCAATAGAAACATCTGAAGAACCCCGAATTAAAACACAGCTTGGAGAATTT
AACAGAGTGCTGGGCGGCGGTGTTGTGAAGGGCTCACTTGTCTTAATTGGAGGAGATCCCGGTATTGGTAAGTCAACCTT
GCTGCTTCAGGTATCCGCTCAGTTATCAGACTCCACGCATAGTGTGCTCTACATTTCAGGCGAGGAATCTGTGAAACAAA
CGAAACTCAGAGCAGATCGACTCGGTATTAATAACCAAACGTTACATGTTTTATCTGAAACCGACATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCATTTGTGGTTGTTGACTCCATTCAGACAGTCTATCAAAGCGATATTACATCAGC
TCCGGGCAGTGTGTCGCAAGTCAGAGAGTGTACGGCAGAGCTGATGAGAATTGCCAAGACAAAGGGTATACCGATTTTTA
TCGTAGGACATGTAACAAAAGAAGGTTCAATTGCTGGTCCGAGACTGTTGGAACATATGGTTGATACTGTTCTTTACTTT
GAAGGAGAGAGGCATCATACGTTCCGCATCCTGCGGGCAGTAAAAAACCGTTTCGGCTCTACAAATGAAATGGGCATTTT
CGAAATGCGGGAAGAGGGTCTGACAGAGGTGCTGAATCCTTCTGAAATCTTTCTTGAGGAACGATCAGCCGGAGCGGCAG
GTTCCAGCATAGTAGCATCTATGGAAGGCACCAGACCGATTCTCGTGGAAATACAGGCCCTTATCTCACCGACCAGCTTT
GGGAATCCCCGGCGTATGGCCACGGGAATTGACCATAACAGAGTGTCACTGCTGATGGCTGTGTTAGAAAAAAGAGTCGG
GCTGCTGCTTCAAAATCAAGATGCGTATTTAAAGGTAGCAGGCGGCGTTAAGCTGGATGAACCGGCAATCGATCTCGCTG
TATCTGTCAGTATTGCATCAAGCTTTAGAGATACACCGCCAAATCCTGCCGACTGCATTATAGGAGAAGTCGGTTTAACA
GGTGAGGTCCGCAGGGTATCCAGAATTGAACAGCGTGTGAAAGAAGCTGCTAAACTTGGATTTAAGCGTATGATCATACC
TGCGGCGAATTTAGATGGATGGACAAAACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(69-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

94.541

99.782

0.943
  radA Streptococcus mitis NCTC 12261

63.135

98.693

0.623
  radA Streptococcus pneumoniae Rx1

63.135

98.693

0.623
  radA Streptococcus pneumoniae D39

63.135

98.693

0.623
  radA Streptococcus pneumoniae R6

63.135

98.693

0.623
  radA Streptococcus pneumoniae TIGR4

63.135

98.693

0.623
  radA Streptococcus mitis SK321

62.914

98.693

0.621