Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RS899_RS29200 Genome accession   NZ_CP135919
Coordinates   6355365..6355772 (+) Length   135 a.a.
NCBI ID   WP_015475142.1    Uniprot ID   A0AA42HJ21
Organism   Pseudomonas sp. C9-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6350365..6360772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS29170 - 6350410..6351414 (-) 1005 WP_037013504.1 aspartate carbamoyltransferase catalytic subunit -
  RS899_RS29175 pyrR 6351460..6351972 (-) 513 WP_024766241.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RS899_RS29180 ruvX 6352091..6352528 (-) 438 WP_089285805.1 Holliday junction resolvase RuvX -
  RS899_RS29185 - 6352525..6353094 (-) 570 WP_054907826.1 YqgE/AlgH family protein -
  RS899_RS29190 - 6353170..6354063 (-) 894 WP_024766239.1 energy transducer TonB -
  RS899_RS29195 gshB 6354120..6355082 (-) 963 WP_054907827.1 glutathione synthase -
  RS899_RS29200 pilG 6355365..6355772 (+) 408 WP_015475142.1 twitching motility response regulator PilG Regulator
  RS899_RS29205 pilH 6355819..6356184 (+) 366 WP_024766237.1 twitching motility response regulator PilH -
  RS899_RS29210 - 6356239..6356775 (+) 537 WP_017520132.1 chemotaxis protein CheW -
  RS899_RS29215 - 6356859..6358907 (+) 2049 WP_054907828.1 methyl-accepting chemotaxis protein -
  RS899_RS29220 - 6358970..6359833 (+) 864 WP_315810483.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14810.17 Da        Isoelectric Point: 6.8621

>NTDB_id=887687 RS899_RS29200 WP_015475142.1 6355365..6355772(+) (pilG) [Pseudomonas sp. C9-3]
MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEHAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=887687 RS899_RS29200 WP_015475142.1 6355365..6355772(+) (pilG) [Pseudomonas sp. C9-3]
ATGGAACAGCATTCCGACGGTTTGAAAGTAATGGTGATCGACGATTCCAAGACGATTCGTCGCACGGCTGAAACCCTGCT
GAAGAAGGTCGGCTGCGATGTCATTACAGCCATCGACGGCTTCGACGCGCTGGCCAAGATCGCCGATACCCATCCCAGCA
TCATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAATAGTGCCTTCAAA
TCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAGTA
CCTCACCAAGCCCTTCAGCAAGGAAGAACTGCTCGGCGCGATCAAGACCCATGTGCCCGACTTCACCCCGGTGGAGCACG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393