Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | RS899_RS29140 | Genome accession | NZ_CP135919 |
| Coordinates | 6343299..6344333 (+) | Length | 344 a.a. |
| NCBI ID | WP_024766758.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. C9-3 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6338299..6349333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RS899_RS29115 | - | 6338654..6340621 (-) | 1968 | WP_315808663.1 | dynamin-like GTPase family protein | - |
| RS899_RS29120 | - | 6340740..6341030 (-) | 291 | WP_315808664.1 | DUF167 domain-containing protein | - |
| RS899_RS29125 | - | 6341081..6341674 (-) | 594 | WP_169934999.1 | YggT family protein | - |
| RS899_RS29130 | proC | 6341688..6342518 (-) | 831 | WP_315808665.1 | pyrroline-5-carboxylate reductase | - |
| RS899_RS29135 | - | 6342536..6343225 (-) | 690 | WP_315808666.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| RS899_RS29140 | pilT | 6343299..6344333 (+) | 1035 | WP_024766758.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RS899_RS29145 | pilU | 6344438..6345583 (+) | 1146 | WP_024766757.1 | type IV pilus ATPase PilU | Machinery gene |
| RS899_RS29150 | - | 6345653..6346057 (+) | 405 | WP_054907821.1 | NINE protein | - |
| RS899_RS29155 | - | 6346281..6347654 (+) | 1374 | WP_315808667.1 | cystathionine beta-synthase | - |
| RS899_RS29160 | - | 6347651..6348820 (+) | 1170 | WP_315808668.1 | PLP-dependent aspartate aminotransferase family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37900.73 Da Isoelectric Point: 6.7751
>NTDB_id=887685 RS899_RS29140 WP_024766758.1 6343299..6344333(+) (pilT) [Pseudomonas sp. C9-3]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFKRVSDVPRGLVLVTGPTGSGKSTSLAAMLDYLNNTKYSHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGALGMQTLDMCL
KGLVAKGLVTRDSAKEKAKIPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGMGEVFKRVSDVPRGLVLVTGPTGSGKSTSLAAMLDYLNNTKYSHILTVED
PIEFVHESKKCLVNQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGALGMQTLDMCL
KGLVAKGLVTRDSAKEKAKIPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=887685 RS899_RS29140 WP_024766758.1 6343299..6344333(+) (pilT) [Pseudomonas sp. C9-3]
ATGGATATTACCGAGCTGCTCGCCTTCAGCGCCAAGCAGGGCGCTTCGGACCTGCACCTCTCGGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGATGTTCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGCAGGTTCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAAGAGTTCCTGGAAACCGACTTTTCCTTCGAAGTGCCGGGCGTGGCGCGC
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTACTCACGATGGA
GGACCTGGGAATGGGAGAAGTGTTCAAACGTGTTTCAGACGTGCCGCGCGGCCTGGTGTTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCCACCTCGCTGGCGGCGATGCTCGACTACCTGAACAACACCAAGTACAGCCACATCCTCACCGTCGAAGAC
CCGATCGAATTCGTCCATGAGTCGAAGAAGTGCCTGGTCAACCAGCGTGAGGTGCACCGCGACACCCTGGGCTTCAACGA
GGCACTGCGCTCGGCCCTGCGTGAGGACCCGGACATCATCCTGGTGGGTGAGATGCGTGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTCTTCGGCACCCTGCACACCACCTCCGCGGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCTGCCGAAGAGAAGTCCATGGTCCGCTCCATGCTCTCCGAATCCTTGCAGGCGGTGATCTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCCGTGTCGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCTGCCATCCAGACCGGCGGCGCGCTCGGCATGCAGACCCTCGACATGTGCCTG
AAAGGCCTGGTCGCCAAGGGCCTGGTCACCCGCGATTCGGCGAAAGAAAAAGCCAAGATCCCGGAAAACTTCTAA
ATGGATATTACCGAGCTGCTCGCCTTCAGCGCCAAGCAGGGCGCTTCGGACCTGCACCTCTCGGCCGGCCTGCCGCCGAT
GATCCGCGTCGACGGCGATGTTCGCCGCATCAACCTGCCGCCGCTCGAGCACAAGCAGGTTCACGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTACGAAGAGTTCCTGGAAACCGACTTTTCCTTCGAAGTGCCGGGCGTGGCGCGC
TTCCGGGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGTTCCGGACCATTCCCTCCAAGGTACTCACGATGGA
GGACCTGGGAATGGGAGAAGTGTTCAAACGTGTTTCAGACGTGCCGCGCGGCCTGGTGTTGGTCACCGGCCCGACCGGTT
CGGGCAAGTCCACCTCGCTGGCGGCGATGCTCGACTACCTGAACAACACCAAGTACAGCCACATCCTCACCGTCGAAGAC
CCGATCGAATTCGTCCATGAGTCGAAGAAGTGCCTGGTCAACCAGCGTGAGGTGCACCGCGACACCCTGGGCTTCAACGA
GGCACTGCGCTCGGCCCTGCGTGAGGACCCGGACATCATCCTGGTGGGTGAGATGCGTGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTCTTCGGCACCCTGCACACCACCTCCGCGGCCAAGACCATCGACCGTATC
GTCGACGTGTTCCCTGCCGAAGAGAAGTCCATGGTCCGCTCCATGCTCTCCGAATCCTTGCAGGCGGTGATCTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGCCGTGTCGCGGCCCACGAGATCATGATCGGCACCCCGGCGATCCGTAACCTGATCC
GCGAGGACAAGGTCGCGCAGATGTACTCTGCCATCCAGACCGGCGGCGCGCTCGGCATGCAGACCCTCGACATGTGCCTG
AAAGGCCTGGTCGCCAAGGGCCTGGTCACCCGCGATTCGGCGAAAGAAAAAGCCAAGATCCCGGAAAACTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
95.349 |
100 |
0.953 |
| pilT | Pseudomonas stutzeri DSM 10701 |
93.605 |
100 |
0.936 |
| pilT | Acinetobacter baumannii D1279779 |
84.593 |
100 |
0.846 |
| pilT | Acinetobacter baumannii strain A118 |
84.593 |
100 |
0.846 |
| pilT | Acinetobacter nosocomialis M2 |
84.302 |
100 |
0.843 |
| pilT | Acinetobacter baylyi ADP1 |
82.267 |
100 |
0.823 |
| pilT | Legionella pneumophila strain Lp02 |
76.331 |
98.256 |
0.75 |
| pilT | Legionella pneumophila strain ERS1305867 |
76.331 |
98.256 |
0.75 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.529 |
98.837 |
0.677 |
| pilT | Vibrio cholerae strain A1552 |
68.529 |
98.837 |
0.677 |
| pilT | Neisseria meningitidis 8013 |
66.377 |
100 |
0.666 |
| pilT | Neisseria gonorrhoeae MS11 |
66.087 |
100 |
0.663 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
52.464 |
100 |
0.526 |
| pilU | Vibrio cholerae strain A1552 |
40.708 |
98.547 |
0.401 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.194 |
97.384 |
0.401 |
| pilU | Acinetobacter baylyi ADP1 |
39.017 |
100 |
0.392 |