Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RS899_RS16510 Genome accession   NZ_CP135919
Coordinates   3650009..3652219 (-) Length   736 a.a.
NCBI ID   WP_315807611.1    Uniprot ID   -
Organism   Pseudomonas sp. C9-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3645009..3657219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS16475 murB 3645365..3646384 (-) 1020 WP_315807606.1 UDP-N-acetylmuramate dehydrogenase -
  RS899_RS16480 - 3646381..3646845 (-) 465 WP_315807607.1 low molecular weight protein-tyrosine-phosphatase -
  RS899_RS16485 kdsB 3646845..3647609 (-) 765 WP_315807608.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RS899_RS16490 - 3647614..3647799 (-) 186 WP_009621404.1 Trm112 family protein -
  RS899_RS16495 lpxK 3647858..3648856 (-) 999 WP_315807609.1 tetraacyldisaccharide 4'-kinase -
  RS899_RS16500 - 3648856..3649305 (-) 450 WP_045211644.1 ExbD/TolR family protein -
  RS899_RS16505 exbB 3649302..3649937 (-) 636 WP_315807610.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RS899_RS16510 comA 3650009..3652219 (-) 2211 WP_315807611.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RS899_RS16515 - 3652382..3652912 (+) 531 WP_054910766.1 DUF2062 domain-containing protein -
  RS899_RS16520 - 3653058..3654305 (-) 1248 WP_315807612.1 lipoprotein-releasing ABC transporter permease subunit -
  RS899_RS16525 lolD 3654317..3655006 (-) 690 WP_024766679.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RS899_RS16530 - 3654999..3656252 (-) 1254 WP_045211653.1 lipoprotein-releasing ABC transporter permease subunit -
  RS899_RS16535 - 3656377..3656952 (+) 576 WP_064979852.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79698.02 Da        Isoelectric Point: 7.9343

>NTDB_id=887674 RS899_RS16510 WP_315807611.1 3650009..3652219(-) (comA) [Pseudomonas sp. C9-3]
MFALALGLLALRWLPALPSGWVLLLLALCALPLLFTRGYFVGLFLLGFAWACQSAQWALDDRLAPELDGRTLWLEGRVEG
LPDRSGPSVRFVLSEVSSPRAQVPATLRLSWFGGPPVEGGERWRLAVKLKRPHGMANGAGFDYEAWLTAQRIGATGSVKD
GQRLEASSGPRAWREAWRQRLLAVDAQGRSGALAALVLGDASGLTTADWQILQDTGTLHLMVISGSHISLLAGLLYAVVA
GLARLGCWPSRVPWLPCACLLAASGAWAYSLMAGFEVPLQRACIMVSIVLLWRLRYRHRGLWTPLLGALLAVLVAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSISGVAANLIAVPWVELVVVPLALLG
SLALGIPWLGEALLWVSGGLLEWLFRLLGWMAELAPAWQPVATPTWTLLLAMLGALLLLAPAGVPLRSLGLAMFLPVFWP
TIPLPAPGMAEIRVLDVGQGLSVLIRTRSQTWLYDTGARNGDFDIGERVVVPTLRSLGVGKLDLLMLSHADNDHAGGAVA
VKRSLRPAQVISGEPERLAPELQAQPCRIEEWTVDDIRLSSWTWAGARESNDRSCALEVEANGERILLTGDLPQSAELAW
LAAHPDEHIDWLLAGHHGSRSSSGPAFLRAIRPSTAIISRGANNPYGHPHPSVVERFRALGIRIQDTEERGALVLTLGAH
GELGGVREGAHFWQEN

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=887674 RS899_RS16510 WP_315807611.1 3650009..3652219(-) (comA) [Pseudomonas sp. C9-3]
ATGTTCGCTCTGGCCCTGGGACTGCTGGCGCTGCGCTGGCTGCCGGCGCTTCCATCCGGTTGGGTTCTGCTGCTTCTCGC
ACTGTGCGCTTTGCCTCTGTTGTTCACTCGCGGCTACTTCGTCGGGCTGTTCCTGCTCGGCTTCGCCTGGGCCTGCCAAT
CGGCCCAGTGGGCGCTGGATGACCGGCTGGCGCCGGAGCTGGACGGCCGCACGCTGTGGCTGGAGGGCAGGGTAGAGGGC
CTGCCGGATCGTTCGGGGCCTTCAGTGCGCTTCGTGCTCTCCGAGGTTTCCAGCCCGCGCGCGCAGGTTCCGGCAACACT
GCGCCTGTCCTGGTTCGGCGGGCCGCCGGTAGAAGGCGGCGAGCGCTGGCGGCTGGCGGTGAAGCTCAAGCGTCCCCATG
GCATGGCCAATGGGGCGGGCTTTGACTATGAGGCCTGGCTCACTGCCCAGCGTATTGGCGCCACCGGCAGCGTAAAGGAT
GGCCAGCGCCTGGAAGCCTCCAGCGGCCCGCGCGCCTGGCGTGAGGCCTGGCGCCAACGCTTGCTGGCAGTGGATGCCCA
GGGTCGCTCCGGCGCACTTGCCGCGTTGGTACTGGGCGACGCTTCCGGCTTGACCACGGCGGACTGGCAGATCCTGCAGG
ACACCGGAACATTGCACCTGATGGTGATTTCCGGCTCACACATTTCTCTGCTGGCGGGCCTGCTCTACGCCGTCGTGGCG
GGGCTGGCGCGCCTGGGCTGCTGGCCATCCCGTGTGCCCTGGTTGCCCTGCGCCTGCCTGCTGGCTGCCAGCGGCGCCTG
GGCCTACAGCCTGATGGCGGGTTTCGAAGTGCCGTTGCAGCGGGCCTGCATCATGGTCTCCATCGTCCTGCTGTGGCGCC
TGCGTTATCGCCATCGCGGCCTGTGGACGCCATTGCTCGGCGCGTTGCTGGCCGTGCTGGTAGCTGAGCCGCTGGTGGTG
TTGCTGCCAGGATTCTGGTTGTCCTACGCGGCGGTCGCTTTGCTGATCTTCGGCTTCTCCGGCCGCCTGGGGCGCTGGAC
GGCCTGGCGCACCTGGTTGCGCGCGCAGTGGCTGATGGCGATCGGGTTGTTGCCGGCGTCCATCGCGCTAGGCCTGCCAC
TGAGCATTTCCGGTGTCGCCGCCAACCTGATTGCCGTGCCCTGGGTGGAGCTGGTCGTGGTTCCGCTCGCCCTGTTGGGC
AGTCTGGCGCTGGGGATTCCCTGGTTGGGCGAGGCCCTGCTGTGGGTGTCCGGCGGCCTGCTGGAGTGGCTGTTCCGCCT
GTTGGGCTGGATGGCCGAACTGGCACCCGCCTGGCAGCCGGTTGCGACCCCGACCTGGACGCTGCTACTGGCGATGCTCG
GTGCGCTCCTGCTGCTGGCGCCGGCGGGAGTACCGCTGCGCTCGCTCGGGCTGGCGATGTTCCTGCCGGTGTTCTGGCCG
ACCATTCCGCTACCCGCGCCGGGCATGGCTGAGATCCGCGTACTGGACGTGGGGCAGGGGCTTTCGGTGCTGATCCGTAC
CCGCAGCCAGACCTGGCTCTACGACACTGGTGCGCGCAATGGAGATTTCGATATCGGCGAGCGAGTGGTGGTGCCGACCT
TGCGCAGTCTTGGCGTCGGCAAGCTCGATCTGCTGATGCTCAGCCATGCGGACAATGACCATGCCGGCGGCGCGGTGGCG
GTAAAGCGCTCGCTCCGGCCTGCGCAGGTCATCAGTGGCGAGCCGGAAAGGCTGGCGCCAGAGCTGCAGGCGCAACCTTG
CCGAATCGAGGAATGGACTGTCGATGACATTCGCCTTTCCAGTTGGACGTGGGCAGGCGCCAGGGAAAGCAACGACCGCT
CCTGCGCGCTGGAGGTCGAAGCCAATGGCGAGCGCATCCTGCTCACTGGCGATCTGCCGCAATCCGCCGAACTGGCTTGG
CTGGCGGCGCATCCGGATGAACACATCGATTGGTTGCTGGCCGGGCACCACGGCAGCCGCAGCTCCTCCGGGCCGGCCTT
CCTGCGAGCGATCCGGCCGTCCACGGCGATCATTTCCCGCGGCGCCAACAACCCCTACGGGCACCCGCATCCGTCGGTCG
TCGAGCGCTTCCGCGCGCTGGGCATCCGGATTCAGGATACGGAGGAGCGGGGCGCGCTGGTCCTGACCCTCGGTGCCCAT
GGCGAGCTTGGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-460)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.382

97.554

0.56