Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RS899_RS16505 Genome accession   NZ_CP135919
Coordinates   3649302..3649937 (-) Length   211 a.a.
NCBI ID   WP_315807610.1    Uniprot ID   -
Organism   Pseudomonas sp. C9-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3644302..3654937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS899_RS16475 murB 3645365..3646384 (-) 1020 WP_315807606.1 UDP-N-acetylmuramate dehydrogenase -
  RS899_RS16480 - 3646381..3646845 (-) 465 WP_315807607.1 low molecular weight protein-tyrosine-phosphatase -
  RS899_RS16485 kdsB 3646845..3647609 (-) 765 WP_315807608.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RS899_RS16490 - 3647614..3647799 (-) 186 WP_009621404.1 Trm112 family protein -
  RS899_RS16495 lpxK 3647858..3648856 (-) 999 WP_315807609.1 tetraacyldisaccharide 4'-kinase -
  RS899_RS16500 - 3648856..3649305 (-) 450 WP_045211644.1 ExbD/TolR family protein -
  RS899_RS16505 exbB 3649302..3649937 (-) 636 WP_315807610.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RS899_RS16510 comA 3650009..3652219 (-) 2211 WP_315807611.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RS899_RS16515 - 3652382..3652912 (+) 531 WP_054910766.1 DUF2062 domain-containing protein -
  RS899_RS16520 - 3653058..3654305 (-) 1248 WP_315807612.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22923.21 Da        Isoelectric Point: 7.2806

>NTDB_id=887673 RS899_RS16505 WP_315807610.1 3649302..3649937(-) (exbB) [Pseudomonas sp. C9-3]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLGRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=887673 RS899_RS16505 WP_315807610.1 3649302..3649937(-) (exbB) [Pseudomonas sp. C9-3]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGCTTGGGCCGCGTGGCCCCGCCGCAGTTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTCAAGGACCTGCGCGCATCCTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAACACGGCCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCTCCCGCGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGCATCTCCAAGGCCCTGATCACCACCGCGGCC
GGCCTGATCGTGGCGATCCCCGCAGTGTTCTTCCACCGTTACCTGCTGCGCCGCGTCGATGAGCTGGTCATTGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806