Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCU87_RS02135 Genome accession   NZ_AP024850
Coordinates   450340..450948 (-) Length   202 a.a.
NCBI ID   WP_062689699.1    Uniprot ID   -
Organism   Photobacterium sanguinicancri strain CECT 7579     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 445340..455948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU87_RS02120 - 446387..447400 (+) 1014 WP_261857753.1 Fe(3+) ABC transporter substrate-binding protein -
  OCU87_RS02125 - 447562..449190 (+) 1629 WP_261857754.1 iron ABC transporter permease -
  OCU87_RS02130 - 449190..450227 (+) 1038 WP_062689698.1 ABC transporter ATP-binding protein -
  OCU87_RS02135 opaR 450340..450948 (-) 609 WP_062689699.1 TetR/AcrR family transcriptional regulator Regulator
  OCU87_RS02140 hpt 451176..451709 (+) 534 WP_062689701.1 hypoxanthine phosphoribosyltransferase -
  OCU87_RS02145 can 451807..452463 (-) 657 WP_062689703.1 carbonate dehydratase -
  OCU87_RS02150 - 452617..453546 (+) 930 WP_261857755.1 ABC transporter ATP-binding protein -
  OCU87_RS02155 - 453543..454313 (+) 771 WP_062689705.1 ABC transporter permease -
  OCU87_RS02160 panC 454443..455330 (-) 888 WP_062689707.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23139.31 Da        Isoelectric Point: 6.2932

>NTDB_id=88761 OCU87_RS02135 WP_062689699.1 450340..450948(-) (opaR) [Photobacterium sanguinicancri strain CECT 7579]
MDTITKKTRTRLSPEKRKQQLLDYALDVFARRGIGRAGHADIAEMANVSVATVFNYFPTREALVEEVLSQVENHFNLLLN
QCLGEPDKTLSARLTCISHNLIDAVIDQKDWIKVWFEWSTSVRDDIWPHFITGNKNSLKQITEMFAEAIESGEITADRDP
KQLGGLLHGICYVLYLHTNLHPDQAQMREQAEQYLANIYHKA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=88761 OCU87_RS02135 WP_062689699.1 450340..450948(-) (opaR) [Photobacterium sanguinicancri strain CECT 7579]
ATGGATACCATCACTAAAAAAACGCGTACACGTTTATCACCAGAAAAGCGCAAACAACAACTTCTTGACTATGCGCTAGA
CGTTTTCGCTCGACGTGGTATTGGCCGTGCGGGTCATGCCGATATCGCAGAAATGGCCAATGTTTCTGTCGCGACTGTTT
TCAATTACTTTCCAACTCGTGAAGCACTGGTTGAAGAAGTCCTGTCGCAAGTCGAAAATCATTTTAACCTGCTGCTAAAC
CAGTGTCTCGGTGAGCCAGATAAAACCTTGTCTGCACGTTTAACCTGTATCAGTCATAACTTAATCGATGCTGTGATCGA
CCAAAAAGATTGGATCAAAGTATGGTTTGAGTGGAGTACTTCCGTACGTGACGACATCTGGCCACATTTCATTACCGGTA
ATAAAAACAGCCTGAAACAAATCACTGAAATGTTTGCTGAAGCCATTGAGAGTGGTGAAATCACCGCAGATCGCGATCCT
AAACAGCTTGGTGGCCTGCTTCATGGCATTTGTTACGTACTTTACCTTCATACCAACCTGCACCCAGATCAGGCGCAGAT
GCGTGAGCAAGCTGAGCAATATCTCGCTAATATTTACCACAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

50.254

97.525

0.49
  hapR Vibrio cholerae C6706

45.078

95.545

0.431
  hapR Vibrio cholerae strain A1552

45.078

95.545

0.431

Multiple sequence alignment