Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RSK81_RS12525 Genome accession   NZ_CP135591
Coordinates   2519188..2519949 (+) Length   253 a.a.
NCBI ID   WP_315686999.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514188..2524949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS12495 (RSK81_12495) comE 2514732..2515496 (-) 765 WP_002899424.1 competence system response regulator transcription factor ComE Regulator
  RSK81_RS12500 (RSK81_12500) comD 2515502..2516836 (-) 1335 WP_002927417.1 competence system sensor histidine kinase ComD -
  RSK81_RS12505 (RSK81_12505) - 2516864..2516971 (-) 108 WP_002894290.1 hypothetical protein -
  RSK81_RS12515 (RSK81_12515) rlmH 2517269..2517748 (-) 480 WP_315686997.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RSK81_RS12520 (RSK81_12520) htrA 2517952..2519124 (+) 1173 WP_002927420.1 S1C family serine protease Regulator
  RSK81_RS12525 (RSK81_12525) spo0J 2519188..2519949 (+) 762 WP_315686999.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29434.17 Da        Isoelectric Point: 9.3320

>NTDB_id=887067 RSK81_RS12525 WP_315686999.1 2519188..2519949(+) (spo0J) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MENFQYIALKDIRTNPYQPRKQFSQKKIEELAASIKENGLIQPIILRKSSLFGYEILAGERRFRAASFLGLETIPAVVKE
LSDDEMLKQAIIENLQREDLNPIEEAESYQNLIDKGLTHDEIAKIMGKSRPYISNIVRLLQLSKEVRQAIKEEEISQGHA
RLLVPLKEEEQLLWLEKIYREDLSVRAVEKLLQQKKSLKKKPNKELFAKSEEEKIKKILGLEVSIQLKSQSKGKLIIPFE
SEEEYQRIINSFK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=887067 RSK81_RS12525 WP_315686999.1 2519188..2519949(+) (spo0J) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGGAAAACTTTCAATATATTGCACTTAAAGACATTCGAACCAATCCTTATCAGCCTCGTAAACAATTTTCACAAAAAAA
GATTGAAGAATTAGCGGCATCAATCAAAGAAAATGGTCTCATTCAGCCAATCATTCTTCGGAAATCTTCACTTTTTGGTT
ATGAAATTTTAGCAGGAGAACGGAGATTTAGAGCTGCCTCTTTTCTTGGCCTAGAAACGATCCCAGCTGTCGTCAAAGAA
TTATCTGATGATGAAATGCTGAAACAGGCCATTATCGAAAATCTTCAAAGAGAAGACTTGAATCCTATAGAAGAAGCTGA
GTCTTATCAAAATTTGATTGACAAAGGCTTGACACATGATGAAATTGCTAAAATCATGGGAAAATCTAGACCCTATATCA
GCAATATTGTCAGACTTTTACAGCTGTCTAAAGAAGTTCGTCAAGCTATCAAGGAAGAAGAGATTTCTCAAGGACATGCC
CGTCTGCTAGTTCCTTTAAAAGAAGAGGAACAGTTACTATGGCTGGAAAAAATCTATCGAGAAGATTTATCGGTTCGAGC
AGTTGAAAAGCTTCTCCAGCAAAAAAAGAGTCTCAAAAAGAAACCTAATAAAGAACTGTTTGCTAAATCTGAAGAGGAAA
AAATTAAAAAAATTCTTGGTCTGGAAGTTTCTATTCAGTTAAAAAGCCAGAGTAAAGGAAAGCTGATTATTCCTTTTGAA
AGCGAAGAAGAATATCAAAGAATTATAAACAGTTTTAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-194)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

52.988

99.209

0.526