Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RSK81_RS05620 Genome accession   NZ_CP135591
Coordinates   1162236..1163465 (+) Length   409 a.a.
NCBI ID   WP_002895582.1    Uniprot ID   A0A3R9G2C7
Organism   Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157236..1168465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSK81_RS05595 (RSK81_05595) - 1158288..1158876 (+) 589 Protein_1085 hypothetical protein -
  RSK81_RS05600 (RSK81_05600) - 1158948..1159358 (+) 411 WP_161543203.1 GNAT family N-acetyltransferase -
  RSK81_RS05605 (RSK81_05605) - 1159471..1160430 (+) 960 WP_125347798.1 ROK family glucokinase -
  RSK81_RS05610 (RSK81_05610) - 1160535..1161374 (+) 840 WP_315687690.1 thymidylate synthase -
  RSK81_RS05615 (RSK81_05615) - 1161499..1162011 (+) 513 WP_002902864.1 dihydrofolate reductase -
  RSK81_RS05620 (RSK81_05620) clpX 1162236..1163465 (+) 1230 WP_002895582.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RSK81_RS05625 (RSK81_05625) yihA 1163476..1164063 (+) 588 WP_002915299.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RSK81_RS05630 (RSK81_05630) - 1164211..1164909 (+) 699 WP_011836915.1 glucosaminidase domain-containing protein -
  RSK81_RS05635 (RSK81_05635) mmuM 1164974..1165921 (+) 948 WP_161543199.1 homocysteine S-methyltransferase -
  RSK81_RS05640 (RSK81_05640) - 1166035..1166832 (+) 798 WP_161543198.1 formate/nitrite transporter family protein -
  RSK81_RS05645 (RSK81_05645) - 1167620..1168336 (+) 717 WP_237657551.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45617.05 Da        Isoelectric Point: 4.3984

>NTDB_id=887035 RSK81_RS05620 WP_002895582.1 1162236..1163465(+) (clpX) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
MPTSRNDDMMVFCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDSSYMQEIISEDVQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=887035 RSK81_RS05620 WP_002895582.1 1162236..1163465(+) (clpX) [Streptococcus sp. DTU_2020_1000888_1_SI_GRL_NUU_041A]
ATGCCTACAAGTCGTAATGATGATATGATGGTTTTTTGTTCTTTCTGTGGGAAGAACCAAGATGAGGTTCAGAAGATTAT
TGCTGGAAATAATGCCTTCATCTGTAATGAATGTGTGGAACTGGCGCAGGAAATCATCCGTGAAGAGTTAGCCGAGGAAG
TGCTGGCAGATCTGTCTGAGGTACCAAAACCTCAGGAGCTGCTGAACATCTTGAACCACTATGTTATCGGGCAAGACCGA
GCAAAGCGTGCCTTAGCAGTAGCGGTCTATAATCACTACAAGCGTATTAACTACCACGACAGCCGTGAAGAAGAAGATGT
GGAACTGCAAAAGTCAAATATTTTGATGATCGGCCCGACTGGGTCGGGTAAGACCTTTCTGGCGCAGACTCTGGCTCGCA
GCCTCAATGTGCCTTTCGCCATTGCGGACGCAACTGCTCTGACTGAAGCTGGTTATGTCGGAGAAGATGTGGAAAATATC
CTCCTCAAGCTTTTGCAGGCGGCTGACTTTAATATTGAGCGCGCAGAACGCGGCATTATCTATGTCGATGAGATTGACAA
GATCGCTAAAAAAGGCGAAAACGTCTCGATCACCCGTGATGTTTCGGGTGAAGGAGTTCAGCAAGCTCTGCTGAAGATTA
TCGAAGGAACAGTAGCTAGTGTACCGCCGCAAGGTGGACGCAAGCATCCGCAGCAGGAAATGATTCAAGTTGATACTAAG
AACATTCTCTTCATCGTTGGCGGTGCTTTTGACGGTATCGAAGAAATCGTAAAACAGCGTCTGGGTGAGAAAATCATTGG
TTTCGGTCAGAACAACCGAGCAATCGACGAAGATAGTTCCTACATGCAGGAAATTATCTCAGAAGACGTTCAAAAGTTTG
GGATTATTCCTGAGTTGATTGGCCGTTTGCCTGTTTTTGCTGCTCTGGAGCAGCTGACAGTTGATGATTTGGTCCGGATT
CTGAAAGAGCCTAGAAATGCACTTATCAAGCAATATCAGGCACTTCTATCTTATGATGATGTTAAACTTGAATTTGACGA
GGATGCTCTGCAGGAGATTGCCAATAAAGCGATTGAACGTAAAACAGGTGCTCGCGGTCTTCGCTCTATCATTGAAGAAA
CTATGATGGATGTCATGTTTGAAGTTCCGAGTCAGGAAAATGTCAAACTTGTCCGCATTACCAAAGAAGCAGTAGATGGA
ACAGATAAGCCTATTCTAGAAACTGCCTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9G2C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.819

100

0.858
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.044

0.565