Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK18_RS09855 Genome accession   NZ_AP027652
Coordinates   2034632..2035369 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSJ-42     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2029632..2040369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK18_RS09840 (VEE39_18900) clpC 2030086..2032659 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AABK18_RS09845 (VEE39_18910) yfiH 2032789..2033520 (-) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  AABK18_RS09850 (VEE39_18920) rluD 2033517..2034497 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK18_RS09855 (VEE39_18930) comL 2034632..2035369 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK18_RS09860 (VEE39_18940) raiA 2035640..2035981 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK18_RS09865 pheL 2036085..2036132 (+) 48 WP_010723158.1 phe operon leader peptide -
  AABK18_RS09870 (VEE39_18950) pheA 2036231..2037391 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK18_RS09875 (VEE39_18960) tyrA 2037434..2038555 (-) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK18_RS09880 (VEE39_18970) aroF 2038566..2039636 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK18_RS09885 (VEE39_18980) yfiL 2039846..2040211 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=88700 AABK18_RS09855 WP_000197686.1 2034632..2035369(+) (comL) [Escherichia coli strain PSJ-42]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=88700 AABK18_RS09855 WP_000197686.1 2034632..2035369(+) (comL) [Escherichia coli strain PSJ-42]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment