Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RRV97_RS02390 Genome accession   NZ_CP135440
Coordinates   503718..504521 (+) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498718..509521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS02360 (RRV97_02360) - 498957..499481 (-) 525 WP_315611852.1 RDD family protein -
  RRV97_RS02365 (RRV97_02365) - 499573..499992 (-) 420 WP_003746427.1 hypothetical protein -
  RRV97_RS02370 (RRV97_02370) holA 500140..501141 (-) 1002 WP_315611853.1 DNA polymerase III subunit delta -
  RRV97_RS02375 (RRV97_02375) lptE 501141..501620 (-) 480 WP_315611854.1 LPS assembly lipoprotein LptE -
  RRV97_RS02380 (RRV97_02380) pgeF 501741..502511 (-) 771 WP_315611855.1 peptidoglycan editing factor PgeF -
  RRV97_RS02385 (RRV97_02385) rluD 502595..503719 (-) 1125 WP_308111717.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RRV97_RS02390 (RRV97_02390) comL 503718..504521 (+) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  RRV97_RS02395 (RRV97_02395) - 504843..506000 (+) 1158 WP_315611856.1 ATP phosphoribosyltransferase regulatory subunit -
  RRV97_RS02400 (RRV97_02400) - 506044..507342 (+) 1299 WP_314589926.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=886622 RRV97_RS02390 WP_004519923.1 503718..504521(+) (comL) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=886622 RRV97_RS02390 WP_004519923.1 503718..504521(+) (comL) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATCGCGCGTTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCTGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGCTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTTGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCCGCCGATACGCGCCGCGTT
TTGGAAACCAACTTCCCGCAAAGTCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876