Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RRU92_RS09155 Genome accession   NZ_CP135436
Coordinates   1914903..1916135 (-) Length   410 a.a.
NCBI ID   WP_006145154.1    Uniprot ID   A0A1S1GYW6
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909903..1921135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS09125 (RRU92_09125) tnpA 1910416..1910880 (+) 465 WP_248035372.1 IS200/IS605 family transposase -
  RRU92_RS09130 (RRU92_09130) whiA 1911093..1912004 (-) 912 WP_153225748.1 DNA-binding protein WhiA -
  RRU92_RS09135 (RRU92_09135) - 1912001..1912978 (-) 978 WP_153225749.1 YvcK family protein -
  RRU92_RS09140 (RRU92_09140) rapZ 1912975..1913865 (-) 891 WP_153225750.1 RNase adapter RapZ -
  RRU92_RS09145 (RRU92_09145) - 1913917..1914297 (-) 381 WP_001140424.1 RidA family protein -
  RRU92_RS09150 (RRU92_09150) yihA 1914307..1914894 (-) 588 WP_006148034.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RRU92_RS09155 (RRU92_09155) clpX 1914903..1916135 (-) 1233 WP_006145154.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RRU92_RS09160 (RRU92_09160) - 1916167..1916337 (-) 171 WP_315639470.1 hypothetical protein -
  RRU92_RS09165 (RRU92_09165) - 1916337..1916843 (-) 507 WP_315639472.1 dihydrofolate reductase -
  RRU92_RS09170 (RRU92_09170) - 1916971..1917489 (-) 519 WP_315639473.1 Dps family protein -
  RRU92_RS09175 (RRU92_09175) - 1917639..1919420 (-) 1782 WP_248035730.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45644.18 Da        Isoelectric Point: 4.4806

>NTDB_id=886559 RRU92_RS09155 WP_006145154.1 1914903..1916135(-) (clpX) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAVD
GTAKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=886559 RRU92_RS09155 WP_006145154.1 1914903..1916135(-) (clpX) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTTAAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGTGAGGAATTGGCAGAGGAAG
TCCTAGCAGACTTGTCTGAAGTGCCAAAACCAATCGAACTCTTAAACATCTTGAACCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTAGCTGTGTATAACCACTACAAACGCATCAATTTCCATGACACTCGTGAAGAGTCAGAAGA
TGTGGATTTGCAAAAATCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAGACTTTCCTTGCTCAAACACTTGCTA
GAAGTTTGAATGTACCTTTTGCCATTGCAGATGCAACAGCTCTTACTGAGGCTGGTTATGTAGGTGAGGACGTGGAAAAT
ATTCTCCTCAAACTCTTGCAAGCAGCTGACTTCAATATCGAGCGTGCAGAGCGTGGAATTATCTACGTAGACGAAATCGA
CAAGATTGCTAAGAAGAGTGAGAACGTTTCTATCACACGTGATGTATCTGGTGAAGGTGTGCAACAAGCTCTCCTCAAGA
TTATCGAGGGAACTGTAGCCAGCGTACCACCTCAAGGTGGACGTAAACATCCACAACAAGAAATGATTCAAGTGGACACT
AAGAATATCCTCTTTATCGTGGGTGGAGCCTTCGATGGCATCGAAGAAATCGTCAAACAGCGTTTGGGAGAAAAAGTCAT
CGGTTTTGGACAAAATAACAAGGCTATTGACGAAAACAGCTCTTACATGCAAGAGATCATTGCAGAAGATATTCAGAAAT
TCGGTATTATTCCTGAGTTGATTGGGCGCTTGCCTGTCTTTGCAGCTCTGGAGCAGTTGACTGTGGATGATTTGGTTCGC
ATTTTGAAAGAGCCAAGAAATGCCTTGGTTAAACAATACCAGACCTTGCTTTCATATGACGATGTTGAGCTTGAATTTGA
CGATGAGGCTCTCCAAGAGATTGCCAACAAAGCCATCGAACGTAAAACTGGTGCGCGTGGACTTCGTTCAATCATCGAAG
AAACCATGCTAGACGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAAACAGTTCGTATCACAAAAGAAGCGGTTGAC
GGAACGGCTAAGCCAATTCTAGAGACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S1GYW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563