Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RRU92_RS07740 Genome accession   NZ_CP135436
Coordinates   1604707..1606509 (-) Length   600 a.a.
NCBI ID   WP_315639225.1    Uniprot ID   A0AA96MNL2
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1599910..1608725 1604707..1606509 within 0


Gene organization within MGE regions


Location: 1599910..1608725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS07715 (RRU92_07715) tnpA 1599910..1600374 (+) 465 WP_315639220.1 IS200/IS605 family transposase -
  RRU92_RS07720 (RRU92_07720) prsA 1600516..1601457 (-) 942 WP_000728085.1 peptidylprolyl isomerase PrsA -
  RRU92_RS07725 (RRU92_07725) - 1601648..1603012 (-) 1365 WP_315639222.1 LPXTG cell wall anchor domain-containing protein -
  RRU92_RS07730 (RRU92_07730) - 1603316..1603939 (-) 624 WP_315639223.1 recombinase family protein -
  RRU92_RS07735 (RRU92_07735) - 1603988..1604701 (-) 714 WP_315639224.1 O-methyltransferase -
  RRU92_RS07740 (RRU92_07740) pepF 1604707..1606509 (-) 1803 WP_315639225.1 oligoendopeptidase F Regulator
  RRU92_RS07745 (RRU92_07745) coiA 1606528..1607484 (-) 957 WP_315639226.1 competence protein CoiA Machinery gene
  RRU92_RS07750 (RRU92_07750) - 1607577..1608725 (-) 1149 WP_315639228.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69869.74 Da        Isoelectric Point: 4.4152

>NTDB_id=886555 RRU92_RS07740 WP_315639225.1 1604707..1606509(-) (pepF) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MVLQRNEINEKDKWDLSTIFATDQAWEDALNQLSEEVETVDQYVGHLLDSAQSLLEITERSLELERQLEKLYVYAHMKND
QDTREAKYQEYYAKAMTIYSQLDQALSFYEPEFMEITEEQMTAFLAAEPKLELYKHFFDQLLQKKDHVLSQREEELLAGA
SEIFGSASETFAILDNADLTFPYVLDDEDNEVQLSHGTYIRLMESKNREVRRCAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYESARQAALAANFVPESVYDNLVSAVRKHLPLLHRYLALRSKILGIPDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGEDYLSRVKRAFNERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLQEVQDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEF
LNELYADLNETYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=886555 RRU92_RS07740 WP_315639225.1 1604707..1606509(-) (pepF) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGGTATTACAACGAAATGAAATAAATGAAAAAGACAAATGGGATCTATCAACGATCTTTGCTACTGATCAGGCTTGGGA
AGATGCCCTCAACCAACTGTCAGAGGAAGTGGAAACAGTTGACCAATATGTAGGTCATCTTTTAGACAGCGCTCAGAGCT
TGCTTGAAATCACTGAACGTTCTCTAGAGTTAGAACGCCAGTTGGAGAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAAGACACGCGCGAAGCTAAGTATCAAGAATACTATGCTAAGGCTATGACGATTTATAGCCAGCTTGATCAGGCACTTTC
TTTCTACGAGCCAGAGTTTATGGAGATTACTGAGGAACAAATGACTGCTTTCTTGGCTGCTGAACCTAAACTTGAGCTCT
ATAAACACTTTTTTGATCAGCTCTTACAAAAGAAAGATCATGTTCTTTCACAGCGTGAAGAAGAATTGCTTGCAGGAGCC
AGTGAAATCTTTGGATCGGCAAGTGAAACCTTTGCTATCCTAGACAATGCTGACCTTACTTTCCCTTACGTTTTGGATGA
CGAAGACAATGAAGTGCAACTCTCTCACGGAACCTACATACGTTTGATGGAATCAAAAAATCGTGAGGTACGTCGTTGTG
CCTATGAAGCACTTTATGCAACTTACGAGCAGTTCCAACACACCTATGCTAAGACTCTACAGACCAATGTCAAAGTCCAA
AACTACCGTGCTAAAGTTCGCAATTATGAGAGTGCTCGTCAGGCTGCTCTTGCGGCTAACTTTGTACCAGAAAGTGTCTA
TGACAATCTAGTGTCAGCAGTTCGCAAACACTTGCCACTTTTGCATCGTTATCTTGCACTACGTTCAAAAATCTTGGGAA
TTCCTGACCTCAAAATGTACGATGTCTATACACCATTGTCTTCAGTGGAATACAGCTTTACTTATGAGGAGGCCTTGAAG
AAGGCAGAAGAAGCTTTGGCAGTTCTTGGTGAGGATTACTTGAGCCGAGTTAAACGTGCCTTCAACGAACGTTGGATTGA
TGTTTATGAAAACCAAGGCAAGCGTTCAGGTGCATATTCTGGCGGTTCTTATGATACCAACGCTTTTATGCTCCTTAACT
GGCAGGACAATCTAGATAATCTCTTTACTCTTGTACATGAGACTGGTCACAGTATGCATTCTAGCTATACACGTGAAACC
CAGCCATACGTTTATGGAGACTATTCAATTTTCTTAGCAGAAATTGCTTCAACTACTAATGAAAACATCCTGACAGAAAA
ATTATTGCAAGAAGTTCAAGATGATGCAACACGCTTTGCAATCTTAAACAACTTCCTAGATGGCTTCCGTGGTACAGTCT
TCCGTCAAACTCAGTTTGCTGAATTTGAGCATGCCATCCACCAAGCTGACCAAAATGGTGAAGTCTTGACCAGTGAATTC
TTAAATGAGCTTTATGCCGACTTGAATGAAACTTACTATGGTTTGAGTAAGGAAGATAATCCTGAAATTCAATATGAATG
GGCCCGTATTCCACATTTCTACTACAACTACTATGTGTATCAATATTCAACAGGTTTTGCAGCAGCTTCAGCCTTGGCTG
AAAAGATTGTACATGGTAGCCAAGAAGATCGTGATCGCTATATCGATTACCTCAAAGCAGGGAAGTCAGACTATCCACTT
AATGTCATGAGAAAAGCAGGCGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCTGTCTTTGAACGTCGTTT
AGATGAGTTTGAAGCTCTTGTTGAAAAATTAGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.611

99.333

0.662