Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RRU92_RS00425 Genome accession   NZ_CP135436
Coordinates   96517..97554 (-) Length   345 a.a.
NCBI ID   WP_000730763.1    Uniprot ID   -
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 91517..102554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00395 (RRU92_00395) - 91524..91904 (-) 381 WP_315640889.1 hypothetical protein -
  RRU92_RS00400 (RRU92_00400) - 92125..93456 (-) 1332 WP_315639863.1 hemolysin family protein -
  RRU92_RS00405 (RRU92_00405) endA 93709..94539 (-) 831 WP_153225124.1 DNA/RNA non-specific endonuclease Machinery gene
  RRU92_RS00410 (RRU92_00410) - 94737..94931 (-) 195 WP_315639866.1 DNA-directed RNA polymerase subunit beta -
  RRU92_RS00415 (RRU92_00415) murA 94918..96204 (-) 1287 WP_315639868.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RRU92_RS00420 (RRU92_00420) - 96230..96460 (-) 231 WP_000615324.1 DUF1146 family protein -
  RRU92_RS00425 (RRU92_00425) sepM 96517..97554 (-) 1038 WP_000730763.1 SepM family pheromone-processing serine protease Regulator
  RRU92_RS00430 (RRU92_00430) coaD 97538..98026 (-) 489 WP_315639870.1 pantetheine-phosphate adenylyltransferase -
  RRU92_RS00435 (RRU92_00435) rsmD 98016..98555 (-) 540 WP_045762698.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RRU92_RS00440 (RRU92_00440) asnA 98616..99608 (-) 993 WP_315639874.1 aspartate--ammonia ligase -
  RRU92_RS00445 (RRU92_00445) - 99705..100388 (-) 684 WP_075228308.1 Bax inhibitor-1 family protein -
  RRU92_RS00450 (RRU92_00450) - 100442..101182 (-) 741 WP_315639875.1 RNA methyltransferase -
  RRU92_RS00455 (RRU92_00455) - 101216..101494 (+) 279 WP_001174501.1 acylphosphatase -
  RRU92_RS00460 (RRU92_00460) yidC 101572..102498 (+) 927 WP_045762702.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37695.04 Da        Isoelectric Point: 5.5272

>NTDB_id=886503 RRU92_RS00425 WP_000730763.1 96517..97554(-) (sepM) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKKKTRWPLYLIIGLIITFIAFTVPLPYYIEVPGTSEDIRKVLQVNNQPDQEEGSYQFVTVGVKHARLVDLVYAWLTPFT
DIHSAKEMTGGSSDAEFMRINQFYMETSQNMAKYQGLKTAGKEIELKYLGVYVLTVTDNSTFKGVLNIADTVTAVNDKTF
ESSKEMVDYVNSQTLGDQVKVTYEEDGKVKTAEGKIITLENGKNGIGIGLIDRTEVSSDVPIKFSTAGIGGPSAGMMFSL
SIYTQIADPTLRNGRIIAGTGSIDRDGNVGDIGGIDKKVVAAAKKGATVFFAPNNPVTEEAKKANPNAKSNYDTALEAAQ
MIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=886503 RRU92_RS00425 WP_000730763.1 96517..97554(-) (sepM) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAGAAAAAAACTAGATGGCCCTTATATCTCATTATTGGGCTCATTATCACTTTTATCGCTTTTACGGTGCCCCTGCC
TTATTATATCGAGGTGCCAGGAACTTCTGAAGATATTCGAAAGGTTTTACAAGTTAATAACCAACCTGACCAAGAGGAAG
GTTCCTACCAATTTGTGACGGTTGGAGTTAAGCACGCTAGACTGGTTGACTTAGTCTATGCTTGGCTAACACCTTTTACG
GACATACATAGTGCCAAAGAGATGACTGGTGGTTCGTCAGATGCGGAATTTATGCGAATCAACCAGTTTTACATGGAAAC
TTCGCAAAACATGGCCAAATATCAAGGTTTGAAGACGGCTGGTAAGGAAATTGAACTCAAATATCTGGGTGTCTATGTTT
TGACTGTAACAGATAACTCGACTTTCAAGGGAGTTCTCAATATTGCTGACACCGTAACCGCTGTTAATGATAAGACTTTT
GAGAGTTCCAAGGAGATGGTTGACTACGTTAATTCTCAAACTCTAGGTGATCAGGTTAAGGTTACTTATGAGGAGGATGG
AAAAGTCAAAACTGCCGAAGGGAAAATTATTACTCTGGAAAATGGGAAAAACGGTATTGGAATCGGTTTGATTGACCGCA
CAGAAGTGTCAAGTGATGTGCCAATCAAGTTTTCAACGGCTGGCATTGGTGGTCCGAGTGCTGGAATGATGTTTAGTTTA
TCCATTTATACGCAAATTGCAGATCCTACTCTTCGAAATGGACGCATCATTGCTGGTACAGGAAGCATCGATAGAGATGG
TAACGTAGGTGACATTGGTGGAATTGATAAAAAAGTGGTTGCCGCAGCTAAAAAGGGAGCAACTGTATTCTTTGCTCCTA
ACAATCCAGTAACTGAGGAAGCTAAAAAGGCAAATCCAAATGCCAAGAGTAACTATGACACAGCTCTAGAAGCAGCTCAA
ATGATTAAAACAGACATGAAAATCGTTCCAGTCAAAACGCTTCAAGATGCGATTGACTATTTGAAAAACAATCCTTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-296)

PDZ domain (PDZ_2)

(129-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588