Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   RRU92_RS00405 Genome accession   NZ_CP135436
Coordinates   93709..94539 (-) Length   276 a.a.
NCBI ID   WP_153225124.1    Uniprot ID   A0AA96MSC5
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 88709..99539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS00390 (RRU92_00390) - 91122..91301 (+) 180 WP_315639860.1 hypothetical protein -
  RRU92_RS00395 (RRU92_00395) - 91524..91904 (-) 381 WP_315640889.1 hypothetical protein -
  RRU92_RS00400 (RRU92_00400) - 92125..93456 (-) 1332 WP_315639863.1 hemolysin family protein -
  RRU92_RS00405 (RRU92_00405) endA 93709..94539 (-) 831 WP_153225124.1 DNA/RNA non-specific endonuclease Machinery gene
  RRU92_RS00410 (RRU92_00410) - 94737..94931 (-) 195 WP_315639866.1 DNA-directed RNA polymerase subunit beta -
  RRU92_RS00415 (RRU92_00415) murA 94918..96204 (-) 1287 WP_315639868.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RRU92_RS00420 (RRU92_00420) - 96230..96460 (-) 231 WP_000615324.1 DUF1146 family protein -
  RRU92_RS00425 (RRU92_00425) sepM 96517..97554 (-) 1038 WP_000730763.1 SepM family pheromone-processing serine protease Regulator
  RRU92_RS00430 (RRU92_00430) coaD 97538..98026 (-) 489 WP_315639870.1 pantetheine-phosphate adenylyltransferase -
  RRU92_RS00435 (RRU92_00435) rsmD 98016..98555 (-) 540 WP_045762698.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30209.73 Da        Isoelectric Point: 9.7187

>NTDB_id=886502 RRU92_RS00405 WP_153225124.1 93709..94539(-) (endA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MNKKTRQALIGLLLFLLLSAGSYYIKQMQSSNTAPQTQVKQKSQSSDTPSQELAESVLTDSIKKQIKGTLEWNGAGAFVV
NNNKTNLDAKVSSKPYADNKTKTVGGETVPTVANAIMSKATRQYKDREETGNGSTSWTPAGWHQVKNLKGSYNHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQARAEDSTGQNYYESLVRKALDQNKRVRYRVTLLYASEEDLVPSASQIE
AKSSDGELEFNVVIPNVQKGIQLDYRTGEVTVTKNN

Nucleotide


Download         Length: 831 bp        

>NTDB_id=886502 RRU92_RS00405 WP_153225124.1 93709..94539(-) (endA) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAATAAAAAAACAAGGCAGGCCCTAATTGGTCTCTTGCTCTTTTTGCTCTTGTCAGCAGGAAGCTACTATATTAAACA
AATGCAGTCTTCCAACACTGCACCACAAACACAAGTAAAACAAAAATCACAGTCGTCTGATACTCCAAGTCAAGAACTGG
CAGAAAGTGTCCTAACAGATTCGATTAAAAAACAAATTAAGGGTACTCTAGAGTGGAATGGCGCAGGAGCCTTTGTCGTC
AATAACAATAAAACCAATCTGGATGCTAAGGTTTCAAGCAAACCCTATGCAGATAACAAGACAAAAACGGTAGGAGGAGA
GACAGTTCCCACAGTAGCGAATGCGATCATGTCAAAAGCAACAAGGCAGTACAAGGACCGTGAAGAAACTGGCAATGGTT
CAACATCTTGGACGCCTGCGGGTTGGCATCAGGTTAAGAATCTAAAAGGAAGCTATAACCATGCGGTCGATAGAGGACAC
TTGTTAGGCTATGCCTTGATAGGTGGTTTAGATGGCTTCGATGCTTCTACCAGCAATCCTAAAAATATTGCCGTACAGAC
AGCTTGGGCCAACCAAGCGCGTGCCGAAGATTCCACAGGCCAAAACTACTATGAGAGTTTGGTTCGAAAAGCCCTAGATC
AGAATAAACGAGTGCGTTACCGTGTGACGTTGCTCTATGCGTCTGAGGAAGACTTGGTGCCGTCTGCATCGCAGATTGAA
GCTAAGTCCTCTGATGGAGAATTGGAGTTTAATGTCGTTATTCCAAATGTCCAAAAGGGAATTCAGTTAGATTACCGAAC
AGGTGAGGTCACAGTCACAAAAAACAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

85.036

99.275

0.844
  endA Streptococcus pneumoniae D39

85.036

99.275

0.844
  endA Streptococcus pneumoniae R6

85.036

99.275

0.844
  endA Streptococcus pneumoniae TIGR4

85.036

99.275

0.844