Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RRV45_RS19835 Genome accession   NZ_CP135435
Coordinates   3963910..3964596 (-) Length   228 a.a.
NCBI ID   WP_315666377.1    Uniprot ID   A0AA96MW16
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3958910..3969596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS19800 (RRV45_19800) flgM 3958914..3959180 (-) 267 WP_315666371.1 flagellar biosynthesis anti-sigma factor FlgM -
  RRV45_RS19805 (RRV45_19805) - 3959272..3959700 (-) 429 WP_315669097.1 TIGR03826 family flagellar region protein -
  RRV45_RS19810 (RRV45_19810) - 3959790..3960398 (-) 609 WP_315666372.1 ComF family protein -
  RRV45_RS19815 (RRV45_19815) - 3960484..3961980 (-) 1497 WP_315666373.1 DEAD/DEAH box helicase -
  RRV45_RS19820 (RRV45_19820) - 3962044..3962886 (-) 843 WP_315666374.1 DegV family protein -
  RRV45_RS19825 (RRV45_19825) sda 3963026..3963181 (-) 156 WP_315666375.1 sporulation histidine kinase inhibitor Sda -
  RRV45_RS19830 (RRV45_19830) - 3963411..3963695 (+) 285 WP_315666376.1 hypothetical protein -
  RRV45_RS19835 (RRV45_19835) degU 3963910..3964596 (-) 687 WP_315666377.1 response regulator transcription factor Regulator
  RRV45_RS19840 (RRV45_19840) degS 3964782..3965924 (-) 1143 WP_315666378.1 sensor histidine kinase Regulator
  RRV45_RS19845 (RRV45_19845) - 3966817..3967455 (+) 639 WP_315666379.1 YigZ family protein -
  RRV45_RS19850 (RRV45_19850) - 3967558..3968595 (+) 1038 WP_315666380.1 LCP family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25499.23 Da        Isoelectric Point: 6.3034

>NTDB_id=886488 RRV45_RS19835 WP_315666377.1 3963910..3964596(-) (degU) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MTTKIVIIDDHQLFREGVKRILDFEKSFTVVAEGDDGCEALALVEKHQPDVVIMDINMPTTNGVEATRQLIEKYPESKVI
ILSIHDDENYVSHALKTGASGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHNLVNEYRRLALEESGKGGGYTQRVEIRR
PLHLLTRRECEVLQLLADGKSNRGIGEAIFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 687 bp        

>NTDB_id=886488 RRV45_RS19835 WP_315666377.1 3963910..3964596(-) (degU) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
TTGACTACAAAGATTGTCATAATCGATGACCACCAGTTGTTTAGAGAAGGCGTAAAGAGAATACTAGATTTTGAAAAATC
GTTTACGGTTGTTGCTGAAGGCGATGACGGATGCGAGGCGTTAGCACTTGTAGAAAAACATCAGCCAGACGTTGTAATCA
TGGATATTAATATGCCTACAACAAACGGAGTAGAAGCAACGAGACAGTTAATTGAGAAATATCCAGAATCAAAGGTCATT
ATTCTATCGATTCACGATGATGAAAACTATGTTTCACATGCCCTAAAAACTGGCGCTAGTGGATACTTATTGAAAGAAAT
GGATGCTGATGCATTAATCGAGGCTGTAAAGGTTGTCGCGGAAGGCGGATCCTACCTGCATCCAAAGGTTACTCATAATT
TGGTGAATGAATATCGCCGTCTCGCACTTGAAGAGTCAGGTAAGGGTGGGGGCTACACACAAAGAGTAGAAATTCGCCGC
CCGCTTCACTTACTAACTCGCCGCGAATGCGAAGTTCTTCAGCTGCTTGCTGACGGAAAAAGCAACCGCGGTATCGGCGA
AGCCATCTTCATCAGTGAAAAAACAGTTAAAAACCACGTGAGTAACATACTTCAAAAGATGAATGTTAACGACCGTACTC
AAGCCGTTGTCGTAGCGATCAAAAATGGCTGGGTGGAAGTCCGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(164-219)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

83.036

98.246

0.816