Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RRV45_RS14745 Genome accession   NZ_CP135435
Coordinates   2969011..2970714 (-) Length   567 a.a.
NCBI ID   WP_315665451.1    Uniprot ID   A0AA96MUC7
Organism   Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2964011..2975714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV45_RS14725 (RRV45_14725) - 2965442..2965678 (+) 237 WP_315665447.1 DUF2627 domain-containing protein -
  RRV45_RS14730 (RRV45_14730) - 2965712..2966443 (-) 732 WP_315665448.1 glycerophosphodiester phosphodiesterase -
  RRV45_RS14735 (RRV45_14735) spo0A 2966516..2967307 (-) 792 WP_315665449.1 sporulation transcription factor Spo0A Regulator
  RRV45_RS14740 (RRV45_14740) spoIVB 2967601..2968887 (-) 1287 WP_315665450.1 SpoIVB peptidase -
  RRV45_RS14745 (RRV45_14745) recN 2969011..2970714 (-) 1704 WP_315665451.1 DNA repair protein RecN Machinery gene
  RRV45_RS14750 (RRV45_14750) ahrC 2970733..2971182 (-) 450 WP_315665452.1 transcriptional regulator AhrC/ArgR -
  RRV45_RS14755 (RRV45_14755) - 2971382..2972224 (-) 843 WP_315665453.1 TlyA family RNA methyltransferase -
  RRV45_RS14760 (RRV45_14760) dxs 2972228..2974120 (-) 1893 WP_315665454.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RRV45_RS14765 (RRV45_14765) - 2974306..2975199 (-) 894 WP_410489296.1 polyprenyl synthetase family protein -
  RRV45_RS14770 (RRV45_14770) - 2975202..2975435 (-) 234 WP_315665455.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64331.52 Da        Isoelectric Point: 5.4495

>NTDB_id=886475 RRV45_RS14745 WP_315665451.1 2969011..2970714(-) (recN) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MLTELSIRNFAIIEALSISLDKGLTVLSGETGAGKSIIIDAIHLLVGGRGSAEYVRHGEDKAEIEGLFQMEDPNHPIYKR
AIEFGIELEDGMIVLRRDISKSGKSVCRINGKLVTISILREIGSTLIDIHGQHEHQELMDEIKHISLLDQFGGEKISSAH
FEYERVYQMYEQKLKYLKTLSENDQQMAHRLDLIQFQYDEIQKANLKLNEDEELYEERKKLSNFERIFDSLQAGYSGLQG
EQRGLDWIGLVMGHIEDAAGIDPSYKELAEAVSNSYYQLEDVMRSLRNELDFLEYDPGRLAEIEDRLNEIQQLKRKYGKT
IVEILEYASKIEEEIETLQNKETHISHLEKEISSLRKDLTVEAEELSTLRKNTAKTLIKLIHKELKALYMDKTVFEVKFD
SDLENFTKNGLDKVEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVAINSQVLCISHLPQVAAMADTHLYIAKNIKDGRTKTSVKALNEAEKVKEIGRMISGVEITDLTKEHAKELLQLAKKIK
VQEEKIH

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=886475 RRV45_RS14745 WP_315665451.1 2969011..2970714(-) (recN) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
TTGTTAACTGAATTATCAATTAGGAATTTTGCTATTATTGAAGCCCTTTCCATTTCATTAGATAAGGGCTTGACTGTTTT
AAGCGGTGAAACGGGTGCGGGTAAGTCGATCATTATTGATGCGATTCATCTCCTTGTAGGCGGAAGAGGATCTGCGGAAT
ATGTAAGGCATGGAGAGGATAAGGCCGAAATAGAAGGTTTGTTTCAAATGGAAGATCCAAATCACCCAATATACAAAAGG
GCGATCGAATTTGGTATTGAACTGGAAGATGGCATGATTGTTCTTAGAAGAGATATTTCAAAGTCAGGAAAAAGTGTGTG
CAGAATCAATGGCAAACTCGTTACAATTTCGATTTTAAGGGAAATTGGAAGTACATTGATTGATATTCATGGGCAGCATG
AGCACCAGGAATTGATGGATGAAATAAAGCATATTAGTCTTCTTGACCAATTTGGCGGTGAGAAGATTAGCTCTGCACAT
TTCGAATACGAGCGAGTTTATCAAATGTATGAGCAAAAATTAAAATACTTAAAAACATTAAGTGAAAATGATCAGCAAAT
GGCCCATCGGCTAGATTTAATCCAGTTTCAATATGATGAAATTCAAAAAGCAAATTTAAAGCTAAATGAAGATGAGGAGC
TTTATGAAGAGCGGAAAAAGCTTAGTAACTTCGAACGGATATTCGATTCCTTACAAGCAGGCTACTCTGGTCTTCAAGGG
GAGCAAAGAGGTCTGGATTGGATAGGACTTGTTATGGGGCATATTGAAGATGCCGCTGGAATTGATCCATCATATAAGGA
GCTTGCTGAAGCTGTGTCAAACAGCTATTATCAGCTAGAGGATGTAATGAGAAGCCTTCGGAATGAACTTGATTTTCTAG
AGTACGATCCTGGAAGACTTGCTGAAATCGAGGACAGACTAAATGAGATACAACAATTAAAACGAAAGTATGGAAAGACT
ATCGTTGAGATTCTTGAGTATGCTTCAAAAATCGAAGAAGAAATAGAAACATTACAAAATAAAGAAACACATATAAGCCA
TTTAGAAAAAGAAATTTCCTCCTTACGAAAAGATCTTACAGTTGAAGCGGAAGAATTGTCCACTTTAAGAAAAAACACAG
CTAAAACTTTAATAAAATTAATACATAAAGAATTAAAAGCGCTTTATATGGACAAGACTGTATTTGAAGTGAAATTTGAT
TCAGATTTGGAGAATTTCACAAAAAATGGATTGGATAAAGTTGAATTTTACCTATCAACCAATCCAGGAGAACCATTGAA
ACCCCTCTCAAAAATTGCATCAGGGGGAGAATTATCAAGAATTATGCTTGCCTTAAAAAGTATTTTTTCAAAGCACCAAG
GAGTTACCTCTATTATTTTTGATGAGGTGGATACAGGAGTAAGCGGCCGGGTTGCCCAAGCTATTGCAGAAAAGATTCAC
CATGTTGCGATTAATTCGCAAGTGTTGTGTATCTCTCATTTACCTCAAGTAGCTGCAATGGCAGATACACATTTGTATAT
CGCAAAAAATATTAAAGATGGCCGGACGAAAACATCAGTTAAGGCACTAAATGAAGCAGAAAAAGTCAAGGAAATTGGCC
GGATGATTTCAGGGGTCGAAATTACTGATTTAACGAAAGAGCATGCAAAAGAGCTTCTTCAGCTTGCAAAAAAAATTAAG
GTGCAGGAAGAAAAAATACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.087

100

0.63