Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RRV45_RS08300 | Genome accession | NZ_CP135435 |
| Coordinates | 1678266..1680410 (-) | Length | 714 a.a. |
| NCBI ID | WP_315668345.1 | Uniprot ID | A0AA96S7X5 |
| Organism | Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1673266..1685410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RRV45_RS08285 (RRV45_08285) | - | 1674245..1675741 (-) | 1497 | WP_315668342.1 | ATP-binding protein | - |
| RRV45_RS08290 (RRV45_08290) | - | 1675944..1676381 (+) | 438 | WP_315668343.1 | MarR family transcriptional regulator | - |
| RRV45_RS08295 (RRV45_08295) | - | 1676493..1678187 (+) | 1695 | WP_315668344.1 | M3 family oligoendopeptidase | - |
| RRV45_RS08300 (RRV45_08300) | clpC | 1678266..1680410 (-) | 2145 | WP_315668345.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| RRV45_RS08305 (RRV45_08305) | - | 1680608..1681648 (+) | 1041 | WP_315668346.1 | hypothetical protein | - |
| RRV45_RS08310 (RRV45_08310) | - | 1681778..1682467 (-) | 690 | WP_315668347.1 | hypothetical protein | - |
| RRV45_RS08315 (RRV45_08315) | - | 1682614..1683225 (-) | 612 | WP_315668348.1 | type II CAAX endopeptidase family protein | - |
| RRV45_RS08320 (RRV45_08320) | - | 1683369..1683479 (+) | 111 | WP_315668349.1 | DUF6254 family protein | - |
| RRV45_RS08325 (RRV45_08325) | - | 1683574..1683762 (-) | 189 | WP_315668350.1 | YkvS family protein | - |
| RRV45_RS08330 (RRV45_08330) | - | 1684014..1684211 (+) | 198 | WP_410489344.1 | hypothetical protein | - |
| RRV45_RS08335 (RRV45_08335) | - | 1684379..1684756 (+) | 378 | WP_315668351.1 | cytochrome-c oxidase | - |
| RRV45_RS08340 (RRV45_08340) | - | 1684881..1685105 (+) | 225 | WP_315668352.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 714 a.a. Molecular weight: 79655.06 Da Isoelectric Point: 6.0840
>NTDB_id=886468 RRV45_RS08300 WP_315668345.1 1678266..1680410(-) (clpC) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MLCQKCRDKEANVQFKVNVNGNEKNLILCQSCYQDEKAKIGSSFGPSLSGFSGFNQLPFEELFNNINSAQSPKNNPATKD
AKGTGRGGFIDQFGRNLTGLAKAGLIDPVIGRDEEINRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLAASISEGKVPKK
LLNKEVYLLDVASLVANTGIRGQFEERMKQIIHELQERKNIILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVG
ATTLKEYRQIEKDPALERRFQPVQVLEPTADEALGILNGLKSKYEDYHEVSYSDDALKACVYLSSRYIQDRFLPDKAIDL
MDEAGSKINLKSDLPSSDQIENRLKEINKQKEKALQEENYEEAAKLRDEEIKLEKALNANNHMSRPIVEIHHIQEIIEKN
TGIPVGKLLEDDQIKMKNIESNLSKKVIGQKDAVLKVAKAIRRSRAGLKSKNRPIGSFLFVGPTGVGKTELTKTLAEELF
GSKEALIRLDMSEYMEKHSISKIIGSPPGYVGHEEAGQLTEKIRLNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQ
GRTVSFKDSVIIMTSNAGVQHREIHVGFGTNEAMKEASILDTLGQFFKPEFLNRFDNIIEFKSLNKEHLLQIVEIMLNDL
NQNLSEQNIKLTVSDDAKSKLAELGYNPAFGARPLRRVIQDQLEDKLADFIIDQPGVHQLQAILETDEIILKTK
MLCQKCRDKEANVQFKVNVNGNEKNLILCQSCYQDEKAKIGSSFGPSLSGFSGFNQLPFEELFNNINSAQSPKNNPATKD
AKGTGRGGFIDQFGRNLTGLAKAGLIDPVIGRDEEINRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLAASISEGKVPKK
LLNKEVYLLDVASLVANTGIRGQFEERMKQIIHELQERKNIILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVG
ATTLKEYRQIEKDPALERRFQPVQVLEPTADEALGILNGLKSKYEDYHEVSYSDDALKACVYLSSRYIQDRFLPDKAIDL
MDEAGSKINLKSDLPSSDQIENRLKEINKQKEKALQEENYEEAAKLRDEEIKLEKALNANNHMSRPIVEIHHIQEIIEKN
TGIPVGKLLEDDQIKMKNIESNLSKKVIGQKDAVLKVAKAIRRSRAGLKSKNRPIGSFLFVGPTGVGKTELTKTLAEELF
GSKEALIRLDMSEYMEKHSISKIIGSPPGYVGHEEAGQLTEKIRLNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQ
GRTVSFKDSVIIMTSNAGVQHREIHVGFGTNEAMKEASILDTLGQFFKPEFLNRFDNIIEFKSLNKEHLLQIVEIMLNDL
NQNLSEQNIKLTVSDDAKSKLAELGYNPAFGARPLRRVIQDQLEDKLADFIIDQPGVHQLQAILETDEIILKTK
Nucleotide
Download Length: 2145 bp
>NTDB_id=886468 RRV45_RS08300 WP_315668345.1 1678266..1680410(-) (clpC) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGCTTTGTCAAAAATGTCGTGATAAAGAAGCAAATGTACAATTTAAAGTAAATGTAAACGGAAATGAAAAAAACCTAAT
CCTTTGCCAAAGCTGCTATCAGGATGAAAAAGCAAAGATTGGTTCCTCCTTTGGACCATCTTTAAGCGGATTTTCAGGTT
TTAATCAGCTTCCATTTGAGGAGCTATTTAATAATATAAACTCAGCCCAGAGTCCCAAAAATAATCCTGCTACAAAGGAC
GCCAAAGGAACTGGCCGCGGTGGATTTATTGACCAATTCGGCAGAAACCTAACAGGGCTTGCTAAAGCTGGACTAATTGA
TCCCGTGATTGGAAGGGATGAAGAGATTAACCGTGTCATTGAAATATTAAATAGAAGGAATAAAAATAACCCTGTTTTAA
TCGGGGAGCCTGGTGTCGGGAAAACTGCCATTGCCGAAGGATTAGCCGCCTCTATTTCAGAGGGCAAAGTTCCAAAGAAA
CTCCTTAATAAGGAGGTTTACTTGCTGGATGTTGCTTCACTAGTTGCTAATACCGGCATTCGCGGACAATTCGAAGAAAG
AATGAAACAAATAATACATGAACTGCAAGAAAGAAAAAATATTATTCTCTTTATCGATGAAATTCATCTACTCGTTGGAG
CCGGCTCAGCCGAAGGCTCTATGGATGCAGGAAATATTCTAAAACCGGCACTTGCTAGAGGGGAACTGCAATTAGTCGGT
GCAACTACATTAAAGGAATACCGTCAAATTGAAAAGGATCCAGCTCTTGAACGGCGATTCCAGCCGGTACAAGTACTAGA
GCCAACCGCTGACGAAGCACTCGGGATTCTAAATGGCCTTAAATCAAAGTATGAAGATTATCATGAGGTATCCTATTCAG
ATGACGCTTTAAAGGCTTGTGTATATTTATCAAGCCGATATATTCAAGATCGCTTCCTCCCAGATAAGGCAATAGATTTA
ATGGATGAAGCCGGTTCAAAAATTAATTTGAAATCAGACCTTCCTTCCTCTGATCAGATTGAAAACCGCTTGAAGGAAAT
TAACAAACAGAAGGAAAAAGCTCTACAAGAAGAGAACTATGAAGAAGCTGCAAAGCTTAGGGATGAAGAAATAAAATTGG
AGAAGGCATTAAACGCAAATAACCATATGTCCCGTCCAATTGTTGAAATCCACCATATTCAAGAAATCATTGAGAAAAAT
ACAGGGATTCCTGTTGGAAAACTTCTAGAAGATGACCAAATCAAGATGAAAAACATTGAATCAAATCTCTCTAAAAAAGT
TATCGGCCAAAAGGACGCCGTTCTTAAGGTAGCAAAGGCAATCCGCAGAAGCCGAGCCGGTCTTAAATCAAAAAACCGTC
CAATTGGTTCCTTCTTGTTTGTAGGACCAACAGGTGTCGGTAAGACAGAATTAACTAAAACACTTGCTGAAGAACTATTT
GGCTCTAAAGAGGCACTGATTCGCCTTGATATGAGTGAATATATGGAGAAGCATAGTATTTCAAAAATTATCGGCTCCCC
TCCAGGTTATGTTGGACATGAAGAAGCGGGTCAATTAACCGAAAAAATTCGCCTTAACCCATACAGTATTATTCTGCTAG
ATGAGATTGAAAAGGCACATCCTGATGTTCAGCATATATTCCTCCAAATTCTTGAGGATGGACGTTTAACAGATAGTCAG
GGACGCACTGTGAGCTTTAAAGACTCCGTCATTATTATGACAAGTAATGCTGGTGTACAGCACAGGGAGATTCATGTAGG
ATTTGGTACGAATGAAGCGATGAAGGAAGCAAGTATTTTAGATACTCTTGGTCAGTTCTTTAAACCAGAATTCCTCAATC
GTTTTGATAATATCATTGAGTTTAAGTCACTTAATAAAGAACATCTATTACAAATTGTTGAAATTATGCTCAATGATTTA
AATCAAAACCTAAGTGAGCAAAACATTAAGCTTACAGTTTCCGATGATGCTAAATCAAAGCTTGCCGAGCTAGGCTATAA
CCCTGCTTTCGGAGCACGTCCGTTGCGAAGAGTTATTCAGGATCAGCTCGAAGATAAGCTAGCTGATTTCATCATTGATC
AGCCCGGTGTGCATCAATTACAGGCAATTTTAGAAACTGATGAAATCATATTAAAAACAAAATAG
ATGCTTTGTCAAAAATGTCGTGATAAAGAAGCAAATGTACAATTTAAAGTAAATGTAAACGGAAATGAAAAAAACCTAAT
CCTTTGCCAAAGCTGCTATCAGGATGAAAAAGCAAAGATTGGTTCCTCCTTTGGACCATCTTTAAGCGGATTTTCAGGTT
TTAATCAGCTTCCATTTGAGGAGCTATTTAATAATATAAACTCAGCCCAGAGTCCCAAAAATAATCCTGCTACAAAGGAC
GCCAAAGGAACTGGCCGCGGTGGATTTATTGACCAATTCGGCAGAAACCTAACAGGGCTTGCTAAAGCTGGACTAATTGA
TCCCGTGATTGGAAGGGATGAAGAGATTAACCGTGTCATTGAAATATTAAATAGAAGGAATAAAAATAACCCTGTTTTAA
TCGGGGAGCCTGGTGTCGGGAAAACTGCCATTGCCGAAGGATTAGCCGCCTCTATTTCAGAGGGCAAAGTTCCAAAGAAA
CTCCTTAATAAGGAGGTTTACTTGCTGGATGTTGCTTCACTAGTTGCTAATACCGGCATTCGCGGACAATTCGAAGAAAG
AATGAAACAAATAATACATGAACTGCAAGAAAGAAAAAATATTATTCTCTTTATCGATGAAATTCATCTACTCGTTGGAG
CCGGCTCAGCCGAAGGCTCTATGGATGCAGGAAATATTCTAAAACCGGCACTTGCTAGAGGGGAACTGCAATTAGTCGGT
GCAACTACATTAAAGGAATACCGTCAAATTGAAAAGGATCCAGCTCTTGAACGGCGATTCCAGCCGGTACAAGTACTAGA
GCCAACCGCTGACGAAGCACTCGGGATTCTAAATGGCCTTAAATCAAAGTATGAAGATTATCATGAGGTATCCTATTCAG
ATGACGCTTTAAAGGCTTGTGTATATTTATCAAGCCGATATATTCAAGATCGCTTCCTCCCAGATAAGGCAATAGATTTA
ATGGATGAAGCCGGTTCAAAAATTAATTTGAAATCAGACCTTCCTTCCTCTGATCAGATTGAAAACCGCTTGAAGGAAAT
TAACAAACAGAAGGAAAAAGCTCTACAAGAAGAGAACTATGAAGAAGCTGCAAAGCTTAGGGATGAAGAAATAAAATTGG
AGAAGGCATTAAACGCAAATAACCATATGTCCCGTCCAATTGTTGAAATCCACCATATTCAAGAAATCATTGAGAAAAAT
ACAGGGATTCCTGTTGGAAAACTTCTAGAAGATGACCAAATCAAGATGAAAAACATTGAATCAAATCTCTCTAAAAAAGT
TATCGGCCAAAAGGACGCCGTTCTTAAGGTAGCAAAGGCAATCCGCAGAAGCCGAGCCGGTCTTAAATCAAAAAACCGTC
CAATTGGTTCCTTCTTGTTTGTAGGACCAACAGGTGTCGGTAAGACAGAATTAACTAAAACACTTGCTGAAGAACTATTT
GGCTCTAAAGAGGCACTGATTCGCCTTGATATGAGTGAATATATGGAGAAGCATAGTATTTCAAAAATTATCGGCTCCCC
TCCAGGTTATGTTGGACATGAAGAAGCGGGTCAATTAACCGAAAAAATTCGCCTTAACCCATACAGTATTATTCTGCTAG
ATGAGATTGAAAAGGCACATCCTGATGTTCAGCATATATTCCTCCAAATTCTTGAGGATGGACGTTTAACAGATAGTCAG
GGACGCACTGTGAGCTTTAAAGACTCCGTCATTATTATGACAAGTAATGCTGGTGTACAGCACAGGGAGATTCATGTAGG
ATTTGGTACGAATGAAGCGATGAAGGAAGCAAGTATTTTAGATACTCTTGGTCAGTTCTTTAAACCAGAATTCCTCAATC
GTTTTGATAATATCATTGAGTTTAAGTCACTTAATAAAGAACATCTATTACAAATTGTTGAAATTATGCTCAATGATTTA
AATCAAAACCTAAGTGAGCAAAACATTAAGCTTACAGTTTCCGATGATGCTAAATCAAAGCTTGCCGAGCTAGGCTATAA
CCCTGCTTTCGGAGCACGTCCGTTGCGAAGAGTTATTCAGGATCAGCTCGAAGATAAGCTAGCTGATTTCATCATTGATC
AGCCCGGTGTGCATCAATTACAGGCAATTTTAGAAACTGATGAAATCATATTAAAAACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
57.337 |
100 |
0.591 |
| clpE | Streptococcus mutans UA159 |
55.855 |
100 |
0.581 |
| clpE | Streptococcus pneumoniae Rx1 |
55.951 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae D39 |
55.951 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae R6 |
55.951 |
100 |
0.573 |
| clpE | Streptococcus pneumoniae TIGR4 |
55.814 |
100 |
0.571 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
53.333 |
90.336 |
0.482 |
| clpC | Streptococcus mutans UA159 |
46.26 |
91.737 |
0.424 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.673 |
87.255 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
47.65 |
86.415 |
0.412 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.685 |
94.258 |
0.412 |
| clpC | Streptococcus pneumoniae Rx1 |
43.685 |
94.258 |
0.412 |
| clpC | Streptococcus pneumoniae D39 |
43.685 |
94.258 |
0.412 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.326 |
86.415 |
0.409 |
| clpA | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
44.759 |
84.174 |
0.377 |