Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RRV45_RS00540 | Genome accession | NZ_CP135435 |
| Coordinates | 105290..107737 (+) | Length | 815 a.a. |
| NCBI ID | WP_315666845.1 | Uniprot ID | A0AA96MXX9 |
| Organism | Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 100290..112737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RRV45_RS00525 (RRV45_00525) | - | 103220..103630 (+) | 411 | WP_410489351.1 | CtsR family transcriptional regulator | - |
| RRV45_RS00530 (RRV45_00530) | - | 103655..104203 (+) | 549 | WP_315666843.1 | UvrB/UvrC motif-containing protein | - |
| RRV45_RS00535 (RRV45_00535) | - | 104206..105285 (+) | 1080 | WP_315666844.1 | protein arginine kinase | - |
| RRV45_RS00540 (RRV45_00540) | clpC | 105290..107737 (+) | 2448 | WP_315666845.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| RRV45_RS00545 (RRV45_00545) | radA | 107861..109240 (+) | 1380 | WP_315666846.1 | DNA repair protein RadA | Machinery gene |
| RRV45_RS00550 (RRV45_00550) | disA | 109244..110317 (+) | 1074 | WP_315666847.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| RRV45_RS00555 (RRV45_00555) | - | 110515..111597 (+) | 1083 | WP_315666848.1 | PIN/TRAM domain-containing protein | - |
| RRV45_RS00560 (RRV45_00560) | ispD | 111644..112336 (+) | 693 | WP_315666849.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 815 a.a. Molecular weight: 90548.17 Da Isoelectric Point: 6.0545
>NTDB_id=886450 RRV45_RS00540 WP_315666845.1 105290..107737(+) (clpC) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALHALGLGSEKIQKEVENLIGRGQDASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGHQGSSASANTP
TLDGLARDLTAIAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRDKRVMT
LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYR
KYIEKDAALERRFQPITVDEPTADESVQILQGLRDRYEAHHRVTITDAAIDAAVKLSDRYISDRFLPDKAIDLIDEAGSK
VRLRSYTTPPNLKELELKLEDVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKSWKEKQGKENSEVTVEDIASVVS
SWTGIPVSKLAQTETQKLLNLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAES
MFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTD
SKGRTVDFRNTVLIMTSNVGAEALRRNKYVGFNIQDGEQDYKDMKGKVMEELKKSFRPEFLNRIDEIIVFHALEKKHLQE
IVTLMSDQLTKRLREQDINLELTDAAKEKIAEEGYDPEYGARPIRRAIQKHIEDRLSEELLKGTVLTGQGIVIDVKDGEF
VVETAKEKPAATLQK
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALHALGLGSEKIQKEVENLIGRGQDASQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGHQGSSASANTP
TLDGLARDLTAIAREGSLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPETLRDKRVMT
LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEYR
KYIEKDAALERRFQPITVDEPTADESVQILQGLRDRYEAHHRVTITDAAIDAAVKLSDRYISDRFLPDKAIDLIDEAGSK
VRLRSYTTPPNLKELELKLEDVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKSWKEKQGKENSEVTVEDIASVVS
SWTGIPVSKLAQTETQKLLNLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAES
MFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTD
SKGRTVDFRNTVLIMTSNVGAEALRRNKYVGFNIQDGEQDYKDMKGKVMEELKKSFRPEFLNRIDEIIVFHALEKKHLQE
IVTLMSDQLTKRLREQDINLELTDAAKEKIAEEGYDPEYGARPIRRAIQKHIEDRLSEELLKGTVLTGQGIVIDVKDGEF
VVETAKEKPAATLQK
Nucleotide
Download Length: 2448 bp
>NTDB_id=886450 RRV45_RS00540 WP_315666845.1 105290..107737(+) (clpC) [Bacillus sp. DTU_2020_1000418_1_SI_GHA_SEK_038]
ATGATGTTCGGTCGTTTTACAGAGAGAGCACAAAAGGTATTAGCTTTAGCTCAAGAGGAAGCCATTCGTTTAGGTCATAA
TAATATTGGAACAGAACATATTTTGCTTGGTCTTGTACGAGAAGGAGAAGGAATTGCTGCGAAGGCTCTGCATGCACTAG
GCTTAGGTTCGGAAAAAATCCAAAAGGAAGTTGAGAACTTAATCGGCAGAGGGCAGGATGCATCACAGACGATTCACTAC
ACGCCTAGAGCTAAGAAAGTAATTGAACTTTCCATGGATGAAGCACGGAAATTAGGCCATTCCTATGTAGGGACAGAGCA
TATCCTCCTTGGCCTCATTCGTGAAGGGGAAGGCGTTGCTGCAAGGGTACTTAACAATCTTGGTGTCAGTCTAAATAAAG
CTAGGCAACAAGTGTTGCAGCTATTAGGAAGCAATGAGTCCGGCGGTCATCAAGGATCTTCGGCAAGTGCGAATACCCCT
ACACTTGATGGCTTGGCAAGAGACTTAACAGCCATTGCCAGAGAAGGAAGTTTGGATCCGGTAATCGGACGCGGCAAGGA
AATTCAGCGTGTAATTGAAGTATTAAGCCGCCGTACAAAAAACAACCCAGTTCTCATCGGGGAGCCAGGCGTAGGAAAAA
CGGCTATAGCAGAAGGCTTAGCACAGCAAATTATTAATAACGAAGTACCAGAAACTCTCCGTGATAAGCGGGTCATGACC
CTTGATATGGGTACCGTTGTTGCGGGAACAAAATATCGTGGTGAATTTGAAGACCGTCTAAAGAAGGTTATGGATGAAAT
TCGCCAGGCAGGCAATATTATTTTATTCATTGACGAGCTTCATACCTTAATTGGAGCTGGTGGAGCAGAAGGCGCCATTG
ATGCTTCGAATATCCTGAAACCTTCTCTTGCCCGAGGAGAGTTGCAATGTATTGGAGCAACTACACTAGATGAATACCGC
AAATATATTGAAAAAGATGCGGCATTAGAAAGACGTTTTCAGCCAATTACCGTTGATGAGCCAACAGCAGATGAATCTGT
ACAAATTTTACAAGGACTTAGAGATCGGTATGAGGCACATCACCGTGTAACCATTACAGATGCAGCTATTGATGCAGCAG
TGAAGCTATCCGATCGTTACATTTCCGATCGTTTCCTTCCAGACAAAGCGATTGATTTAATTGATGAAGCTGGGTCAAAG
GTAAGACTGCGTTCTTATACAACTCCTCCTAATCTAAAAGAATTAGAGCTAAAGCTAGAAGATGTCCGCAAAGAAAAGGA
TGCAGCTGTCCAAAGTCAGGAGTTCGAAAAGGCTGCTTCTTTAAGAGATACGGAACAGCGTCTTCGTGAACAGTTAGAGG
AGACAAAGAAATCTTGGAAGGAAAAGCAGGGCAAGGAAAACAGTGAGGTTACGGTTGAAGACATTGCAAGCGTAGTGTCC
AGCTGGACGGGAATTCCTGTTTCGAAGCTCGCTCAGACAGAGACGCAAAAGCTGCTTAACCTTGAGGAAATTTTACACTC
AAGAGTTATTGGTCAAGAGGAAGCAGTTAAAGCGATTTCCAAAGCAGTTCGCCGTGCTAGAGCCGGATTAAAGGATCCAA
AAAGGCCAATTGGTTCATTTGTATTCCTTGGACCAACAGGTGTGGGAAAAACGGAGCTCGCCCGTGCGCTTGCTGAATCT
ATGTTTGGCGATGAAGATGCAATGATCCGCATTGATATGTCCGAATACATGGAGAAGCATTCAACATCCAGACTAGTAGG
ATCCCCTCCAGGCTATGTTGGATATGAGGAAGGCGGACAGTTAACGGAAAAAGTCCGCAGAAAACCTTATTCTGTCGTCC
TGCTAGATGAAATTGAAAAAGCACATCCAGATGTATTTAATATTCTATTGCAAGTATTAGAGGATGGCCGCTTAACAGAT
TCTAAGGGAAGAACAGTAGACTTCCGGAACACCGTCTTAATTATGACCTCCAACGTTGGGGCGGAAGCCTTGAGACGTAA
TAAATATGTTGGATTTAACATTCAAGATGGAGAACAGGATTACAAGGATATGAAAGGCAAGGTCATGGAGGAGCTGAAGA
AATCATTCCGTCCAGAATTCCTTAACCGTATTGATGAAATCATTGTTTTCCATGCATTAGAGAAAAAGCATCTGCAAGAA
ATCGTGACACTTATGTCTGATCAATTAACAAAACGATTAAGAGAACAGGATATAAATCTCGAATTAACAGATGCAGCGAA
GGAGAAAATTGCTGAGGAAGGCTATGATCCTGAGTATGGAGCTAGGCCTATTCGCAGAGCTATTCAAAAGCACATCGAGG
ACCGATTATCTGAGGAATTGTTAAAAGGTACTGTATTAACGGGCCAGGGCATTGTCATTGATGTCAAGGATGGGGAATTT
GTAGTGGAAACAGCAAAAGAAAAGCCAGCTGCAACCTTACAAAAATAA
ATGATGTTCGGTCGTTTTACAGAGAGAGCACAAAAGGTATTAGCTTTAGCTCAAGAGGAAGCCATTCGTTTAGGTCATAA
TAATATTGGAACAGAACATATTTTGCTTGGTCTTGTACGAGAAGGAGAAGGAATTGCTGCGAAGGCTCTGCATGCACTAG
GCTTAGGTTCGGAAAAAATCCAAAAGGAAGTTGAGAACTTAATCGGCAGAGGGCAGGATGCATCACAGACGATTCACTAC
ACGCCTAGAGCTAAGAAAGTAATTGAACTTTCCATGGATGAAGCACGGAAATTAGGCCATTCCTATGTAGGGACAGAGCA
TATCCTCCTTGGCCTCATTCGTGAAGGGGAAGGCGTTGCTGCAAGGGTACTTAACAATCTTGGTGTCAGTCTAAATAAAG
CTAGGCAACAAGTGTTGCAGCTATTAGGAAGCAATGAGTCCGGCGGTCATCAAGGATCTTCGGCAAGTGCGAATACCCCT
ACACTTGATGGCTTGGCAAGAGACTTAACAGCCATTGCCAGAGAAGGAAGTTTGGATCCGGTAATCGGACGCGGCAAGGA
AATTCAGCGTGTAATTGAAGTATTAAGCCGCCGTACAAAAAACAACCCAGTTCTCATCGGGGAGCCAGGCGTAGGAAAAA
CGGCTATAGCAGAAGGCTTAGCACAGCAAATTATTAATAACGAAGTACCAGAAACTCTCCGTGATAAGCGGGTCATGACC
CTTGATATGGGTACCGTTGTTGCGGGAACAAAATATCGTGGTGAATTTGAAGACCGTCTAAAGAAGGTTATGGATGAAAT
TCGCCAGGCAGGCAATATTATTTTATTCATTGACGAGCTTCATACCTTAATTGGAGCTGGTGGAGCAGAAGGCGCCATTG
ATGCTTCGAATATCCTGAAACCTTCTCTTGCCCGAGGAGAGTTGCAATGTATTGGAGCAACTACACTAGATGAATACCGC
AAATATATTGAAAAAGATGCGGCATTAGAAAGACGTTTTCAGCCAATTACCGTTGATGAGCCAACAGCAGATGAATCTGT
ACAAATTTTACAAGGACTTAGAGATCGGTATGAGGCACATCACCGTGTAACCATTACAGATGCAGCTATTGATGCAGCAG
TGAAGCTATCCGATCGTTACATTTCCGATCGTTTCCTTCCAGACAAAGCGATTGATTTAATTGATGAAGCTGGGTCAAAG
GTAAGACTGCGTTCTTATACAACTCCTCCTAATCTAAAAGAATTAGAGCTAAAGCTAGAAGATGTCCGCAAAGAAAAGGA
TGCAGCTGTCCAAAGTCAGGAGTTCGAAAAGGCTGCTTCTTTAAGAGATACGGAACAGCGTCTTCGTGAACAGTTAGAGG
AGACAAAGAAATCTTGGAAGGAAAAGCAGGGCAAGGAAAACAGTGAGGTTACGGTTGAAGACATTGCAAGCGTAGTGTCC
AGCTGGACGGGAATTCCTGTTTCGAAGCTCGCTCAGACAGAGACGCAAAAGCTGCTTAACCTTGAGGAAATTTTACACTC
AAGAGTTATTGGTCAAGAGGAAGCAGTTAAAGCGATTTCCAAAGCAGTTCGCCGTGCTAGAGCCGGATTAAAGGATCCAA
AAAGGCCAATTGGTTCATTTGTATTCCTTGGACCAACAGGTGTGGGAAAAACGGAGCTCGCCCGTGCGCTTGCTGAATCT
ATGTTTGGCGATGAAGATGCAATGATCCGCATTGATATGTCCGAATACATGGAGAAGCATTCAACATCCAGACTAGTAGG
ATCCCCTCCAGGCTATGTTGGATATGAGGAAGGCGGACAGTTAACGGAAAAAGTCCGCAGAAAACCTTATTCTGTCGTCC
TGCTAGATGAAATTGAAAAAGCACATCCAGATGTATTTAATATTCTATTGCAAGTATTAGAGGATGGCCGCTTAACAGAT
TCTAAGGGAAGAACAGTAGACTTCCGGAACACCGTCTTAATTATGACCTCCAACGTTGGGGCGGAAGCCTTGAGACGTAA
TAAATATGTTGGATTTAACATTCAAGATGGAGAACAGGATTACAAGGATATGAAAGGCAAGGTCATGGAGGAGCTGAAGA
AATCATTCCGTCCAGAATTCCTTAACCGTATTGATGAAATCATTGTTTTCCATGCATTAGAGAAAAAGCATCTGCAAGAA
ATCGTGACACTTATGTCTGATCAATTAACAAAACGATTAAGAGAACAGGATATAAATCTCGAATTAACAGATGCAGCGAA
GGAGAAAATTGCTGAGGAAGGCTATGATCCTGAGTATGGAGCTAGGCCTATTCGCAGAGCTATTCAAAAGCACATCGAGG
ACCGATTATCTGAGGAATTGTTAAAAGGTACTGTATTAACGGGCCAGGGCATTGTCATTGATGTCAAGGATGGGGAATTT
GTAGTGGAAACAGCAAAAGAAAAGCCAGCTGCAACCTTACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
89.317 |
98.773 |
0.882 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.751 |
98.405 |
0.49 |
| clpC | Streptococcus thermophilus LMD-9 |
48.005 |
100 |
0.487 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.515 |
100 |
0.481 |
| clpC | Streptococcus pneumoniae Rx1 |
46.683 |
99.877 |
0.466 |
| clpC | Streptococcus pneumoniae D39 |
46.683 |
99.877 |
0.466 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.56 |
99.877 |
0.465 |
| clpC | Streptococcus mutans UA159 |
45.763 |
100 |
0.464 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.221 |
80 |
0.426 |
| clpE | Streptococcus pneumoniae Rx1 |
52.833 |
80.123 |
0.423 |
| clpE | Streptococcus pneumoniae D39 |
52.833 |
80.123 |
0.423 |
| clpE | Streptococcus pneumoniae R6 |
52.833 |
80.123 |
0.423 |
| clpE | Streptococcus mutans UA159 |
55.288 |
76.564 |
0.423 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.579 |
81.595 |
0.421 |