Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK04_RS05715 Genome accession   NZ_AP027648
Coordinates   1183161..1183898 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSJ-36     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178161..1188898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK04_RS05690 (VEE37_11040) tyrA 1178535..1179656 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK04_RS05695 (VEE37_11050) pheA 1179699..1180859 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK04_RS05700 pheL 1180958..1181005 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AABK04_RS05705 (VEE37_11060) raiA 1181109..1181450 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK04_RS05710 (VEE37_11070) - 1181782..1183110 (+) 1329 WP_000547316.1 IS4-like element IS4 family transposase -
  AABK04_RS05715 (VEE37_11080) comL 1183161..1183898 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK04_RS05720 (VEE37_11090) rluD 1184033..1185013 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK04_RS05725 (VEE37_11100) yfiH 1185010..1185741 (+) 732 WP_023486560.1 purine nucleoside phosphorylase YfiH -
  AABK04_RS05730 (VEE37_11110) clpC 1185871..1188444 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=88619 AABK04_RS05715 WP_000197686.1 1183161..1183898(-) (comL) [Escherichia coli strain PSJ-36]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=88619 AABK04_RS05715 WP_000197686.1 1183161..1183898(-) (comL) [Escherichia coli strain PSJ-36]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment