Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RP314_RS01860 Genome accession   NZ_CP135199
Coordinates   359060..359179 (-) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML21-47     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 354060..364179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP314_RS01820 (RP314_01820) speE 354456..355286 (+) 831 WP_003151052.1 spermidine synthase -
  RP314_RS01825 (RP314_01825) speB 355346..356218 (+) 873 WP_003151054.1 agmatinase -
  RP314_RS01830 (RP314_01830) - 356388..356606 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  RP314_RS01835 (RP314_01835) - 357197..357709 (-) 513 WP_077722993.1 stage II sporulation protein M -
  RP314_RS01840 (RP314_01840) - 357753..358034 (-) 282 WP_014306021.1 hypothetical protein -
  RP314_RS01850 (RP314_01850) - 358441..358644 (-) 204 WP_069473623.1 hypothetical protein -
  RP314_RS01855 (RP314_01855) - 358658..358861 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  RP314_RS01860 (RP314_01860) phrF 359060..359179 (-) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RP314_RS01865 (RP314_01865) rapF 359163..360308 (-) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  RP314_RS01870 (RP314_01870) - 360539..361894 (+) 1356 WP_077722991.1 YncE family protein -
  RP314_RS01875 (RP314_01875) - 361934..363310 (+) 1377 WP_077722990.1 YncE family protein -
  RP314_RS01880 (RP314_01880) - 363317..363829 (-) 513 Protein_370 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=886174 RP314_RS01860 WP_069473622.1 359060..359179(-) (phrF) [Bacillus velezensis strain CMML21-47]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=886174 RP314_RS01860 WP_069473622.1 359060..359179(-) (phrF) [Bacillus velezensis strain CMML21-47]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436