Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RJD11_RS16565 Genome accession   NZ_CP135184
Coordinates   3257513..3258157 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain NDB     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252513..3263157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS16530 (RJD11_16530) - 3253692..3254123 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  RJD11_RS16535 (RJD11_16535) - 3254123..3254464 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  RJD11_RS16540 (RJD11_16540) - 3254457..3255944 (+) 1488 WP_072589517.1 Na+/H+ antiporter subunit D -
  RJD11_RS16545 (RJD11_16545) - 3255950..3256426 (+) 477 WP_218791341.1 Na+/H+ antiporter subunit E -
  RJD11_RS16550 (RJD11_16550) - 3256426..3256710 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  RJD11_RS16555 (RJD11_16555) mnhG 3256694..3257068 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  RJD11_RS16560 (RJD11_16560) - 3257108..3257491 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  RJD11_RS16565 (RJD11_16565) comA 3257513..3258157 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RJD11_RS16570 (RJD11_16570) comP 3258238..3260544 (-) 2307 WP_015240483.1 sensor histidine kinase Regulator
  RJD11_RS16575 (RJD11_16575) comX 3260563..3260739 (-) 177 WP_015240484.1 competence pheromone ComX -
  RJD11_RS16580 (RJD11_16580) - 3260754..3261629 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  RJD11_RS16585 (RJD11_16585) degQ 3261781..3261921 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RJD11_RS16590 (RJD11_16590) - 3262386..3262727 (+) 342 WP_124692757.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=886062 RJD11_RS16565 WP_003152052.1 3257513..3258157(-) (comA) [Bacillus velezensis strain NDB]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=886062 RJD11_RS16565 WP_003152052.1 3257513..3258157(-) (comA) [Bacillus velezensis strain NDB]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864