Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RJD11_RS01995 Genome accession   NZ_CP135184
Coordinates   393584..394537 (+) Length   317 a.a.
NCBI ID   WP_012116802.1    Uniprot ID   A7Z1C8
Organism   Bacillus velezensis strain NDB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388584..399537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS01970 (RJD11_01970) - 388630..390063 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  RJD11_RS01975 (RJD11_01975) rapC 390216..391364 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  RJD11_RS01980 (RJD11_01980) phrC 391348..391467 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RJD11_RS01985 (RJD11_01985) - 391616..391726 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  RJD11_RS01990 (RJD11_01990) - 391806..393170 (-) 1365 WP_052827044.1 aspartate kinase -
  RJD11_RS01995 (RJD11_01995) ceuB 393584..394537 (+) 954 WP_012116802.1 ABC transporter permease Machinery gene
  RJD11_RS02000 (RJD11_02000) - 394527..395474 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  RJD11_RS02005 (RJD11_02005) - 395468..396226 (+) 759 WP_315563793.1 ABC transporter ATP-binding protein -
  RJD11_RS02010 (RJD11_02010) - 396248..397192 (+) 945 WP_218791487.1 siderophore ABC transporter substrate-binding protein -
  RJD11_RS02015 (RJD11_02015) - 397234..398658 (-) 1425 WP_315563795.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=886016 RJD11_RS01995 WP_012116802.1 393584..394537(+) (ceuB) [Bacillus velezensis strain NDB]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=886016 RJD11_RS01995 WP_012116802.1 393584..394537(+) (ceuB) [Bacillus velezensis strain NDB]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGTTCAGTCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533