Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   RJD11_RS01980 Genome accession   NZ_CP135184
Coordinates   391348..391467 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis strain NDB     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 386348..396467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD11_RS01965 (RJD11_01965) - 387960..388643 (+) 684 WP_007410267.1 response regulator transcription factor -
  RJD11_RS01970 (RJD11_01970) - 388630..390063 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  RJD11_RS01975 (RJD11_01975) rapC 390216..391364 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  RJD11_RS01980 (RJD11_01980) phrC 391348..391467 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RJD11_RS01985 (RJD11_01985) - 391616..391726 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  RJD11_RS01990 (RJD11_01990) - 391806..393170 (-) 1365 WP_052827044.1 aspartate kinase -
  RJD11_RS01995 (RJD11_01995) ceuB 393584..394537 (+) 954 WP_012116802.1 ABC transporter permease Machinery gene
  RJD11_RS02000 (RJD11_02000) - 394527..395474 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  RJD11_RS02005 (RJD11_02005) - 395468..396226 (+) 759 WP_315563793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=886015 RJD11_RS01980 WP_033575081.1 391348..391467(+) (phrC) [Bacillus velezensis strain NDB]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=886015 RJD11_RS01980 WP_033575081.1 391348..391467(+) (phrC) [Bacillus velezensis strain NDB]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744