Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   K6J74_RS02760 Genome accession   NZ_AP024819
Coordinates   535682..536791 (+) Length   369 a.a.
NCBI ID   WP_221272356.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530682..541791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS02755 (NHP190012_05710) comB9 534834..535685 (+) 852 WP_347709911.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K6J74_RS02760 (NHP190012_05720) comB10 535682..536791 (+) 1110 WP_221272356.1 DNA type IV secretion system protein ComB10 Machinery gene
  K6J74_RS02765 (NHP190012_05730) - 536878..537609 (+) 732 WP_053830054.1 (Fe-S)-binding protein -
  K6J74_RS02770 (NHP190012_05740) - 537611..539056 (+) 1446 WP_221272357.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  K6J74_RS02775 (NHP190012_05750) - 539049..539690 (+) 642 WP_221272358.1 lactate utilization protein C -
  K6J74_RS02780 (NHP190012_05760) bcp 539700..540155 (+) 456 WP_221272359.1 thioredoxin-dependent thiol peroxidase -
  K6J74_RS02785 (NHP190012_05770) - 540152..541693 (-) 1542 WP_260321674.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40890.24 Da        Isoelectric Point: 9.0022

>NTDB_id=88599 K6J74_RS02760 WP_221272356.1 535682..536791(+) (comB10) [Helicobacter sp. NHP19-012]
MKPFVKKALLFGGAMVGIFITSLMLNKPKKVPEVLDFKSTNYPLADYLFTPPKVSPPKENPELAHLQALLQENAKEIASL
KAQLEEAKKAPPPQPQVQEPPQETQPPQEQEPTQEELDAKDALSERIQGFEEPQEQEIDYGASHFENLKTHDTATHENRL
LRTITADKMIPAFLVTPISSQLAGKVVAQVESDIFANMGRAVLIPKGSKVIGYYSNNNKIGEYRLDIVWSRIITPQGVNI
TLTNAKGADIKGYSGLVGQMITHNFQRYGMPLLVSTLSNGLLIALTSALANKTGKNNLFGDFLLMQLTRQTGLGLNQIIT
QILKDKSNLKPIIIIREGSRVFISPNLDIFFPTPREGEVVAKFFKHSPP

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=88599 K6J74_RS02760 WP_221272356.1 535682..536791(+) (comB10) [Helicobacter sp. NHP19-012]
ATGAAGCCCTTTGTTAAAAAAGCCCTACTCTTTGGGGGTGCTATGGTTGGTATTTTTATCACTTCCTTAATGCTAAACAA
GCCCAAAAAAGTCCCCGAAGTCTTGGATTTTAAATCCACCAACTACCCTCTAGCCGACTATCTCTTCACCCCACCAAAAG
TTAGCCCACCTAAAGAGAACCCCGAGCTCGCCCATTTGCAAGCCCTCTTACAAGAGAACGCCAAAGAGATCGCCAGCCTA
AAGGCACAATTAGAGGAAGCTAAAAAAGCCCCACCACCCCAGCCACAGGTGCAAGAACCCCCACAAGAAACCCAGCCCCC
ACAAGAGCAAGAGCCCACCCAAGAGGAGCTAGACGCCAAAGACGCTTTAAGTGAGCGTATTCAAGGCTTTGAAGAGCCCC
AAGAGCAAGAGATCGATTACGGGGCAAGCCACTTTGAAAATTTAAAAACCCACGACACCGCTACACATGAAAACCGCTTA
TTACGCACCATCACCGCCGATAAAATGATCCCGGCGTTTTTAGTTACACCCATTAGCTCCCAACTGGCGGGTAAAGTCGT
GGCACAAGTGGAGAGCGACATTTTCGCCAACATGGGGCGGGCGGTTTTGATCCCCAAAGGCTCAAAGGTCATCGGCTATT
ACAGCAATAACAATAAAATCGGCGAATATCGCCTAGACATCGTGTGGAGCCGTATCATCACCCCGCAAGGTGTGAATATC
ACGCTCACCAACGCCAAAGGGGCGGACATTAAGGGTTATAGCGGACTTGTGGGGCAAATGATCACACACAACTTCCAACG
CTATGGCATGCCCTTACTTGTTTCTACGCTCTCTAATGGGCTTTTAATCGCTTTAACTTCTGCCCTTGCCAACAAAACGG
GTAAAAATAATCTCTTTGGCGATTTTTTACTCATGCAACTCACACGCCAAACGGGTTTAGGCTTAAACCAAATCATCACC
CAAATCCTAAAAGATAAGAGCAATTTAAAGCCCATTATCATCATTAGGGAGGGTTCACGGGTGTTTATCTCGCCCAATTT
AGACATATTCTTCCCCACGCCAAGAGAGGGGGAGGTGGTGGCTAAGTTTTTTAAACACAGCCCGCCTTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(163-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

55.385

100

0.585

Multiple sequence alignment