Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   K6J74_RS02755 Genome accession   NZ_AP024819
Coordinates   534834..535685 (+) Length   283 a.a.
NCBI ID   WP_347709911.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-012     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529834..540685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J74_RS02750 (NHP190012_05700) - 530028..534161 (-) 4134 WP_221272354.1 restriction endonuclease subunit S -
  K6J74_RS02755 (NHP190012_05710) comB9 534834..535685 (+) 852 WP_347709911.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K6J74_RS02760 (NHP190012_05720) comB10 535682..536791 (+) 1110 WP_221272356.1 DNA type IV secretion system protein ComB10 Machinery gene
  K6J74_RS02765 (NHP190012_05730) - 536878..537609 (+) 732 WP_053830054.1 (Fe-S)-binding protein -
  K6J74_RS02770 (NHP190012_05740) - 537611..539056 (+) 1446 WP_221272357.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  K6J74_RS02775 (NHP190012_05750) - 539049..539690 (+) 642 WP_221272358.1 lactate utilization protein C -
  K6J74_RS02780 (NHP190012_05760) bcp 539700..540155 (+) 456 WP_221272359.1 thioredoxin-dependent thiol peroxidase -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32075.00 Da        Isoelectric Point: 9.6484

>NTDB_id=88598 K6J74_RS02755 WP_347709911.1 534834..535685(+) (comB9) [Helicobacter sp. NHP19-012]
MDELATQEDTPQEHTIQDLHAIQNSFFNKERNALDNTLFIDYKLGQMPKLRLRYAMVTTLIFSEPIAEVVLGDDIGFSTK
TLGRNVLLIKPLEVGIDSNLNVIGTSGKIYAFYIFSTTFTSPKNPILNVYVSNKHFFTDKQALNQPLATLENKSQISTTP
TQFLKIGTGGNVLLVDKSQIERGYKVLGGKRRAWFCLWLCKIAFKAPIKPLDIFNDKHFTYFKFDSHRSSVKFPVAYKVV
DGYDNPINTRIVGDYLIAEDISAKWTLREGKVHACVRRVSKAP

Nucleotide


Download         Length: 852 bp        

>NTDB_id=88598 K6J74_RS02755 WP_347709911.1 534834..535685(+) (comB9) [Helicobacter sp. NHP19-012]
GTGGACGAGCTAGCCACGCAAGAGGACACCCCCCAAGAGCACACTATCCAAGACCTACACGCCATCCAAAACAGCTTTTT
CAACAAAGAGCGCAACGCCTTGGACAACACTTTGTTTATTGACTACAAACTCGGGCAAATGCCAAAACTGCGCCTACGCT
ACGCCATGGTTACGACCCTCATTTTTAGCGAGCCGATTGCTGAGGTGGTGCTAGGCGATGACATCGGTTTTAGCACCAAA
ACCCTAGGGCGCAATGTGCTTTTAATCAAGCCCCTAGAAGTGGGCATCGACTCGAATTTAAATGTCATCGGCACAAGCGG
TAAAATTTATGCCTTTTATATTTTCTCCACGACTTTTACCAGCCCTAAAAACCCTATTTTAAATGTCTATGTGTCTAACA
AGCACTTCTTTACTGACAAACAAGCCCTAAACCAACCCCTAGCCACGCTTGAAAACAAATCCCAAATCTCTACAACCCCC
ACGCAATTTTTAAAGATCGGCACGGGGGGCAATGTGCTTTTAGTGGATAAAAGCCAAATTGAGAGGGGCTATAAGGTGCT
TGGGGGCAAGAGGCGGGCGTGGTTTTGTCTGTGGCTGTGTAAGATCGCCTTTAAAGCCCCCATTAAACCCCTTGACATTT
TTAACGACAAGCATTTCACTTACTTTAAGTTTGACAGCCACCGCTCCAGCGTGAAATTCCCCGTAGCCTATAAAGTCGTG
GATGGCTATGATAACCCGATCAACACCCGCATTGTGGGAGATTATTTAATCGCTGAGGACATCTCCGCCAAATGGACTTT
AAGGGAGGGCAAGGTGCACGCTTGTGTGCGTAGAGTCAGCAAAGCCCCATGA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(40-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

49.828

100

0.512

Multiple sequence alignment