Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QYQ95_RS01205 Genome accession   NZ_CP135176
Coordinates   268341..268970 (+) Length   209 a.a.
NCBI ID   WP_010435284.1    Uniprot ID   A0AAN0LMD0
Organism   Vibrio cyclitrophicus ZF270     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263341..273970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS01190 (QYQ95_01190) - 264015..266573 (-) 2559 WP_032547293.1 PBP1A family penicillin-binding protein -
  QYQ95_RS01195 (QYQ95_01195) pilM 266725..267750 (+) 1026 WP_016787692.1 type IV pilus assembly protein PilM Machinery gene
  QYQ95_RS01200 (QYQ95_01200) pilN 267734..268348 (+) 615 WP_016800517.1 PilN domain-containing protein Machinery gene
  QYQ95_RS01205 (QYQ95_01205) pilO 268341..268970 (+) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  QYQ95_RS01210 (QYQ95_01210) pilP 268957..269475 (+) 519 WP_016787693.1 pilus assembly protein PilP Machinery gene
  QYQ95_RS01215 (QYQ95_01215) pilQ 269535..271226 (+) 1692 WP_016787694.1 type IV pilus secretin PilQ family protein Machinery gene
  QYQ95_RS01220 (QYQ95_01220) aroK 271403..271921 (+) 519 WP_009848907.1 shikimate kinase AroK -
  QYQ95_RS01225 (QYQ95_01225) aroB 271946..273034 (+) 1089 WP_010435273.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24324.99 Da        Isoelectric Point: 4.9074

>NTDB_id=885959 QYQ95_RS01205 WP_010435284.1 268341..268970(+) (pilO) [Vibrio cyclitrophicus ZF270]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=885959 QYQ95_RS01205 WP_010435284.1 268341..268970(+) (pilO) [Vibrio cyclitrophicus ZF270]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTACCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(59-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

76.684

92.344

0.708
  pilO Vibrio campbellii strain DS40M4

74.054

88.517

0.656