Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   K6J72_RS06140 Genome accession   NZ_AP024814
Coordinates   1192956..1193864 (-) Length   302 a.a.
NCBI ID   WP_221279225.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1187956..1198864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J72_RS06115 (NHP190003_12290) bcp 1188422..1188877 (-) 456 WP_221279220.1 thioredoxin-dependent thiol peroxidase -
  K6J72_RS06120 (NHP190003_12300) - 1188886..1189578 (-) 693 WP_221279221.1 lactate utilization protein C -
  K6J72_RS06125 (NHP190003_12310) - 1189571..1191022 (-) 1452 WP_221279222.1 LutB/LldF family L-lactate oxidation iron-sulfur protein -
  K6J72_RS06130 (NHP190003_12320) - 1191024..1191755 (-) 732 WP_221279223.1 (Fe-S)-binding protein -
  K6J72_RS06135 (NHP190003_12330) comB10 1191841..1192959 (-) 1119 WP_221279224.1 DNA type IV secretion system protein ComB10 Machinery gene
  K6J72_RS06140 (NHP190003_12340) comB9 1192956..1193864 (-) 909 WP_221279225.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  K6J72_RS06145 (NHP190003_12350) - 1193954..1194997 (+) 1044 WP_221279226.1 flagellar basal body P-ring protein FlgI -
  K6J72_RS06150 (NHP190003_12360) - 1194994..1195314 (+) 321 WP_221279227.1 hypothetical protein -
  K6J72_RS06155 (NHP190003_12370) - 1195311..1196327 (+) 1017 WP_221279228.1 ATP-binding protein -
  K6J72_RS06160 (NHP190003_12380) metG 1196456..1198330 (+) 1875 WP_221279229.1 methionine--tRNA ligase -
  K6J72_RS06165 (NHP190003_12390) - 1198330..1198707 (+) 378 WP_221279230.1 hypothetical protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 34255.79 Da        Isoelectric Point: 9.2555

>NTDB_id=88592 K6J72_RS06140 WP_221279225.1 1192956..1193864(-) (comB9) [Helicobacter sp. NHP19-003]
MWGFLRFLLCVVFPCVCLAQALESEDPQESPQEHTIQDLHAIQNSFFNKERNALDNTLLIDYKLGQMPKIRLRYAMVTTI
VFSEPIAEVVLGDNIGFSTKTLGRNVLLIKPLEVGIDSNLNVIGASGKIYAFYIFSTTFTSPKNPILNVYVSNKHFFTDK
QAQNQPIAVLENKPQVPTSMSFLKIGQGGNALLVDQNQIERGYQVFGGKKRAWFCLWLCKVAFKAPIKPLDIFNDKHFTY
FKFDHVRSQVKFPVAYKVVDGYDNPINTRIVGDYLIAEDISPKWTLREGKIHACVRKVSKAP

Nucleotide


Download         Length: 909 bp        

>NTDB_id=88592 K6J72_RS06140 WP_221279225.1 1192956..1193864(-) (comB9) [Helicobacter sp. NHP19-003]
ATGTGGGGATTTCTTAGGTTTTTGCTGTGTGTTGTGTTCCCTTGTGTGTGTTTGGCTCAAGCCCTAGAAAGCGAGGACCC
CCAAGAGTCCCCACAAGAGCACACCATTCAAGACCTGCACGCCATACAAAATAGTTTTTTCAATAAAGAGCGCAACGCCC
TAGACAACACCCTTCTCATTGACTACAAACTTGGGCAAATGCCTAAAATCCGCTTGCGCTACGCCATGGTCACGACCATC
GTTTTTAGCGAGCCCATCGCTGAGGTGGTGCTGGGCGACAACATAGGCTTTAGCACCAAGACTTTAGGGCGTAATGTGCT
TTTAATCAAACCCCTAGAAGTGGGGATCGATTCAAACCTTAATGTCATCGGCGCAAGCGGTAAAATTTACGCCTTTTATA
TTTTCTCCACAACTTTCACCAGCCCCAAAAACCCGATTTTAAATGTCTATGTGTCTAACAAACACTTTTTTACAGACAAG
CAAGCGCAAAACCAGCCAATAGCCGTGCTTGAAAACAAGCCCCAAGTCCCCACCTCCATGTCTTTTTTAAAAATCGGGCA
GGGGGGCAATGCGCTTTTAGTGGATCAAAACCAAATTGAGAGGGGCTATCAAGTGTTCGGGGGCAAAAAACGGGCGTGGT
TTTGTCTGTGGCTGTGTAAAGTCGCTTTTAAAGCCCCCATTAAACCTCTTGATATTTTCAACGACAAGCATTTCACTTAC
TTTAAATTTGACCATGTCCGCTCCCAAGTCAAGTTTCCTGTCGCCTACAAGGTAGTAGATGGCTATGACAACCCCATCAA
CACCCGCATTGTGGGGGATTATTTGATCGCCGAGGACATCTCCCCCAAATGGACCTTAAGGGAGGGCAAAATCCACGCTT
GCGTGCGTAAGGTCAGCAAAGCCCCATGA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(60-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

46.296

100

0.497

Multiple sequence alignment