Detailed information NTG0088591

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K6J72_RS06135
• Genome accession: NZ_AP024814
• Coordinates: 1191841..1192959 (-)
• Length: 372 a.a.
• NCBI ID: WP_221279224.1
• Uniprot ID: -
• Organism: Helicobacter sp. NHP19-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1186841..1197959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J72_RS06105 (NHP190003_12270)	-	1187158..1187628 (-)	471	WP_260320545.1	glycosyltransferase	-
K6J72_RS06110 (NHP190003_12280)	-	1187727..1188422 (-)	696	WP_221279219.1	hypothetical protein	-
K6J72_RS06115 (NHP190003_12290)	bcp	1188422..1188877 (-)	456	WP_221279220.1	thioredoxin-dependent thiol peroxidase	-
K6J72_RS06120 (NHP190003_12300)	-	1188886..1189578 (-)	693	WP_221279221.1	lactate utilization protein C	-
K6J72_RS06125 (NHP190003_12310)	-	1189571..1191022 (-)	1452	WP_221279222.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
K6J72_RS06130 (NHP190003_12320)	-	1191024..1191755 (-)	732	WP_221279223.1	(Fe-S)-binding protein	-
K6J72_RS06135 (NHP190003_12330)	comB10	1191841..1192959 (-)	1119	WP_221279224.1	DNA type IV secretion system protein ComB10	Machinery gene
K6J72_RS06140 (NHP190003_12340)	comB9	1192956..1193864 (-)	909	WP_221279225.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K6J72_RS06145 (NHP190003_12350)	-	1193954..1194997 (+)	1044	WP_221279226.1	flagellar basal body P-ring protein FlgI	-
K6J72_RS06150 (NHP190003_12360)	-	1194994..1195314 (+)	321	WP_221279227.1	hypothetical protein	-
K6J72_RS06155 (NHP190003_12370)	-	1195311..1196327 (+)	1017	WP_221279228.1	ATP-binding protein	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41153.44 Da
• Isoelectric Point: 6.5129

>NTDB_id=88591 K6J72_RS06135 WP_221279224.1 1191841..1192959(-) (comB10) [Helicobacter sp. NHP19-003]
MKPLVKKALIFGGAMVAVFATSLILNKPKKAPEVLDLKDTNYPLADYLFTPPKETQPKENPELAHLQALLQENAKQIAQL
KAQLQEAKKSPLPQPPQEMEPEQEPQEQEIEPPEPTQEELEIEETLNGRIQGFEEPKEAEIDYGASHFENLKTHDLATHE
NRLLRTITADKMIPAFLVTPISSQLAGKVVAQVESDIFANMGQAVLIPKGSKAIGYYSNNNKIGEYRLDIVWSRIITPQG
VNITLTNAKGADVKGYSGLVGQMITHNFQRYGMPLLVSTLSNGLLIGLTSALANKTGKNNLFGDFLLMQLTRQTGLGLNQ
IIAQILKDKSNLKPIIIVREGSRVFISPNLDIFFPTPQKGEVVAQFFKHSSP

Nucleotide

• Length: 1119 bp

>NTDB_id=88591 K6J72_RS06135 WP_221279224.1 1191841..1192959(-) (comB10) [Helicobacter sp. NHP19-003]
ATGAAACCCCTTGTTAAAAAAGCTTTGATTTTTGGAGGGGCGATGGTGGCGGTGTTTGCCACTTCTTTGATTTTAAACAA
GCCCAAAAAAGCCCCCGAAGTTTTGGATTTAAAGGACACCAACTACCCCCTAGCCGATTATTTATTCACCCCACCCAAAG
AAACTCAACCTAAAGAAAACCCCGAGTTAGCCCATTTGCAAGCACTCTTGCAAGAGAACGCAAAGCAAATCGCCCAGCTC
AAGGCACAATTACAAGAGGCGAAAAAATCGCCTCTGCCACAACCACCCCAAGAGATGGAGCCCGAGCAAGAGCCCCAAGA
GCAAGAGATAGAGCCACCCGAGCCCACCCAAGAAGAGCTAGAGATTGAAGAGACTTTAAATGGGCGGATACAAGGCTTTG
AAGAGCCCAAAGAGGCAGAGATAGACTATGGGGCAAGCCACTTTGAAAATCTAAAAACCCACGATCTAGCCACCCATGAA
AACCGCCTACTGCGCACCATCACCGCCGATAAAATGATCCCCGCATTTTTAGTAACGCCCATCAGCTCCCAGCTTGCCGG
TAAAGTTGTGGCGCAGGTGGAGAGCGACATTTTCGCCAACATGGGACAGGCTGTTTTAATCCCCAAAGGCTCAAAAGCCA
TCGGCTATTACAGCAACAACAACAAAATCGGCGAATACCGCCTAGACATCGTGTGGAGTCGCATCATCACCCCGCAAGGG
GTCAACATCACACTCACCAACGCCAAAGGGGCAGATGTCAAGGGTTATAGCGGACTCGTGGGGCAAATGATCACGCACAA
CTTCCAACGTTACGGCATGCCCTTGTTGGTGTCTACGCTTTCTAACGGGCTGTTGATCGGCTTGACCTCTGCCCTAGCCA
ACAAAACGGGCAAGAACAATTTATTTGGCGATTTTTTACTCATGCAACTCACCCGCCAAACGGGTTTAGGACTCAACCAA
ATCATCGCCCAAATCTTAAAAGATAAGAGCAACTTAAAGCCCATTATTATCGTGAGGGAGGGCTCACGGGTGTTTATCTC
CCCCAATTTAGACATCTTTTTCCCCACACCCCAAAAAGGCGAGGTGGTGGCGCAGTTTTTTAAACACAGCTCCCCTTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (166-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.985	100	0.565